Lysobacter sp. CW239: H2514_05350
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Entry
H2514_05350 CDS
T10688
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
lyw Lysobacter sp. CW239
Pathway
lyw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lyw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H2514_05350 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lyw03019
]
H2514_05350 (pcnB)
Enzymes [BR:
lyw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
H2514_05350 (pcnB)
Messenger RNA biogenesis [BR:
lyw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
H2514_05350 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_arg_C
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
QOD92052
UniProt:
A0A7L8CZ24
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All DBs
Position
1211230..1212576
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AA seq
448 aa
AA seq
DB search
MPDQNPLSHPVLRVIPRDQHNVSRKDISPSALRVLYRLRDGGFAAYLVGGAVRDLLAGRQ
PKDFDIATDATPEEVKQLFRNCRLIGRRFRLAHVVFGREIIEVATFRANTDDGSGDREQH
EGGRLVRDNVYGTIEDDAVRRDFTANALYYAIEDFSVRDYVGGFEDVQNRLMRLIGDPET
RYREDPVRMLRAVRLAAKLGFQIETATAAPIPQLASLLSESAPARLFEECLKLFLSGHAV
ESFLGLERYGLLPALLPASAAALKANRSGALRKVVLDGLRGTDQRVANGDPVSPAFLFAL
LLWPAYCRSLMALQAQGVQTVDAQRRAADRVTVQQLSTIALPRRFSIPMQEIWLLQSRFS
LRQGKRVSRMLSHPRFRAAFDFLSLRLAASDEHAADVEFWLDQQRQLGDAHRASYDADAD
AVPPGPGDVDAQRRPRRRSRRVSSATDE
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgccagaccaaaatccactttcccatcccgtactgcgggtcatccctcgcgatcaacac
aacgtgtctcgcaaggacatcagtcccagtgcgctgcgggtgctgtatcgcctgcgcgac
ggaggcttcgccgcttatctggtaggcggcgcggtgcgcgacctgctggcggggcggcag
ccgaaggacttcgacatcgccaccgacgcgacgcccgaggaggtcaagcagttgttccgc
aactgccgcctgatcggtcgcaggttccgtctggcgcatgtcgtgttcggccgcgagatc
atcgaggtcgcgacctttcgcgccaataccgacgatggcagtggcgaccgcgagcagcat
gaaggcggccggctggtgcgcgacaacgtctacggcacgatcgaggacgacgcggtgcgc
cgcgacttcaccgccaatgcgctgtattacgcgatcgaggatttctcggtgcgcgattac
gtcggcggtttcgaggatgtgcagaaccgcctgatgcgcctgatcggcgatccggaaacc
cgctaccgcgaggacccggtgcgcatgctgcgtgcggtgcgtctggccgccaagctgggg
ttccagatcgagacggcgaccgccgcgccgatcccgcaactggcgtcgctgctgtcggag
tcggcaccggcgcgcctgttcgaggagtgcctgaagctgttcctgtccgggcatgcggtc
gagagtttcctcgggctggagcgctacggcctgttgcccgcgttgctgcccgccagcgcg
gccgcgctgaaggcgaaccgcagcggggcgttgcgcaaggtggtgctcgacggattgcgc
ggcaccgaccagcgcgtggccaatggcgatccggtgtcgcccgcgttcctgtttgcactg
ctgctgtggccggcctactgccgttcgctgatggccttgcaggcgcagggcgtgcagacg
gtggatgcccagcgtcgcgcggccgaccgggtcacggtgcaacagctgtccaccattgca
ctgccgcgacggttctcgatcccgatgcaggaaatctggctgctgcaatcgcggttctcg
ttgcgccagggcaagcgggtgtcgcggatgctgtcccatccgcggttccgtgctgcattc
gacttcctcagcctgcgtctggccgcgtcggacgagcatgccgccgatgtcgagttctgg
ctcgatcagcagcggcagctgggcgacgcccaccgtgcgtcatacgacgcggatgccgac
gcggtgccgcctggtccgggcgacgtggacgcacagcgccgcccgcgtcgccgaagccgc
cgggtatcgtcagccaccgacgaatga
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