Lysobacter sp. CW239: H2514_08970
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Entry
H2514_08970 CDS
T10688
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lyw Lysobacter sp. CW239
Pathway
lyw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lyw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H2514_08970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lyw03019
]
H2514_08970
Enzymes [BR:
lyw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H2514_08970
Messenger RNA biogenesis [BR:
lyw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H2514_08970
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
QOD90352
LinkDB
All DBs
Position
complement(2038440..2039783)
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AA seq
447 aa
AA seq
DB search
MTFESLGLAPALLRALSEQGYTSPTPIQVQAIPLVLAGHDLLGGAQTGTGKTAAFGLPLL
NRLSKQTAPNASRKPRALILVPTRELAVQVNDSLRGYAKHLRMNFCAIFGGAGMGPQVET
LRRGVDVLVATPGRLIDHMERGTVKLDEIEVLVLDEADRMLDMGFLPAIKRILGRVPAQR
QTLLFSATFESQLKQLALQFMRDPKQVQVAANNTIAQTISHVAHPVDAGRKRDLLIEIIA
KRPADQVLVFGRTKHGCNRLVEQLDAAGLRSVAIHGNKSQAQRQKALRDFKGNRARVLVA
TDVAARGLDIPDLPLVINFDLPMVAEDYVHRIGRTGRNGSTGEALSLVSHDEGGLLRQIQ
HVLKKDVEMVVVPGYEPSRPIRLDVAIPNPRNNAGAGRPPRNNAPRGGARPHGQPAPRHA
HAGQRQRAGAPAGRGGGRGSFRDGSIA
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgacttttgaatccctcggccttgcgcctgcgttgctgcgtgcgctttccgaacagggt
tacacctcgccgaccccgatccaggtccaggcgatcccgctggtattggccggccacgat
ctgctgggcggcgcccagaccggtaccggcaagaccgccgcgttcggcctgccgttgctc
aaccgcctgtccaagcagaccgcgccgaacgcgtcgcgcaagccgcgcgcactgatcctg
gtgccgactcgcgagctggcggtgcaggtcaatgacagcctgcgcggctacgccaagcac
ctgcggatgaacttctgcgcgatcttcggcggcgcgggcatgggcccgcaggtcgagacc
ctgcgtcgcggcgtggacgtgctggtggccaccccgggccggctgatcgaccacatggag
cgcggcacggtcaagctcgacgagatcgaggtgctggtgctcgacgaggccgaccgcatg
ctcgacatgggcttcctgcccgcgatcaagcgcatcctcggccgcgtgccggcgcagcgg
cagacgctgctgttctcggccaccttcgaaagccagctcaagcagctcgcgctgcagttc
atgcgcgatccgaagcaggtccaggtcgccgccaacaacaccatcgcccagaccatcagc
cacgtcgcacacccggtcgatgccggccgcaaacgcgacctgctgatcgaaatcatcgcc
aagcgcccggctgaccaggtgctggtgttcggtcgcaccaagcacggctgcaaccggctg
gtcgaacaactggatgccgccggcctgcgttcggtcgcgatccacggcaacaagagccag
gcgcagcgtcagaaagccctgcgcgacttcaagggcaaccgcgcccgcgtgctggtcgcc
accgacgtcgccgcgcgcggtctggacattcctgatctgccgctggtgatcaacttcgac
ctgccgatggtggccgaggactatgtgcaccggatcggccgcaccggtcgcaacggatcg
accggtgaagcgctgtcgctggtctcgcacgatgaaggcggcctgctgcgccagatccag
cacgtgctgaagaaggatgtggagatggtggtggtgccgggctacgagcccagccgtccg
atccgcctcgacgtggcgatcccgaacccgcgcaacaacgccggtgcgggccgtccgccg
cgcaacaatgctccgcgcggcggtgcgcgtccgcacggccagccggcgccgcgtcatgcc
catgccgggcagcgtcagcgcgcgggggcgccggccggccgtggcggcggtcgcggctcg
ttccgggacggctccatcgcctga
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