Lysobacter sp. CW239: H2514_13320
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Entry
H2514_13320 CDS
T10688
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
lyw Lysobacter sp. CW239
Brite
KEGG Orthology (KO) [BR:
lyw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lyw03019
]
H2514_13320 (hrpB)
Enzymes [BR:
lyw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
H2514_13320 (hrpB)
Messenger RNA biogenesis [BR:
lyw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
H2514_13320 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
HA2_N
Flavi_DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
QOD91110
UniProt:
A0A7L8CW52
LinkDB
All DBs
Position
complement(3026586..3029111)
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AA seq
841 aa
AA seq
DB search
MSRAEFPIDVLLPRIRDSLADHPRLVLEAPPGAGKTTQVPPALLDAPWLQGRKIIVLEPR
RVAARAAARFMAEQRGEAVGEGVGYRIRFDNQVSARTRIEVVTEGILTRMIQDDPALEGV
GAILFDEFHERHLAADLGLALALDVQSALRDDLRIVLMSATLDGARLAAFLDAPRLSSEG
RSYPVQLAHFPARREERLEHQVRRAVEHALATHQGDVLVFLPGQREIGQVERLLAGRDPG
AGDPDAPFAAEVLTLHGELPVEQQSRVLQPDPDGRRRVVLATNVAESSVTLPGVRVVIDA
GLAREPRFDPNSGFSRLDVVHVAQASADQRAGRAGRVAEGWAYRLWPQSQRLEPQRRPEI
AQVELAGLALELAAWGDPDLRFVDPPPPGALASARELLQRLGALQGEAITSLGRRMLALG
THPRLAAMLLAPSDADERALACDLAALLEARDPLRSRSDALHERWQALAGFRAGRVPGDA
SRSALAAIDQAARQWRRRLRVAAPPPSGLPAHQLGDLLAHAFPDRIAHQHRSDPYRYQLA
NGRSARLFDDSAVFGEPWLLVSELRDDPRDARILRAVPIDPLRLELDWPQRFVDTDRVFW
DADARRIAAVRERRFDRIVLDSRPLAAPDRSRYAEALVDAVRQLGLAALPWTEGLQQWRA
RVRCLRVWCPDLALPDLSDAVLLAGLDDWLKPALAGKSRLDALTESEFAEALKSGVDWSL
RQRIDTLAPARIEVPSGLQRRIDYGFDDAADVPLAPVLAVKLQELFGLADSPRVADGRLP
LTLHLLSPGGRPLQVTGDLRGFWERTYPEVRREMKGRYPKHPWPDDPWTATATHRAKPRG
T
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcgccgaatttcccatcgatgtcctgttgccgcggatccgcgacagcctcgcc
gatcatccgcgactggtgctggaagcgccgcccggtgccggcaagaccacccaggtgccg
ccggctttgctggatgcgccgtggctgcagggccggaagatcatcgtgctggagccgcgc
cgggtggcggcacgcgcggcggcgcggttcatggcggagcaacgcggcgaggcggtgggt
gagggggtcggctaccggatccggttcgacaaccaggtatcggcgcgcacccggatcgag
gtcgtcaccgagggcatcctgacccgcatgatccaggacgatccggcgctggaaggcgtc
ggcgcgatcctgttcgacgagttccacgagcgtcatctcgccgccgacctgggcctggcg
ctcgcgctggatgtgcagtcggcgttgcgcgacgacctgcgcatcgtgctgatgtcggcg
accctggacggcgcgcgtctggccgcgtttctggatgcgccgcggctgtccagcgaaggg
cgcagttacccggtgcagctggcgcatttcccggcccggcgcgaggagcgactcgaacac
caggtgcggcgtgcggtggagcatgcgctggccacccatcagggcgacgtgctggtgttc
ctgccgggccagcgcgagatcggccaggtcgaacggctgctcgccggccgcgaccccggc
gcgggagatcccgatgccccgttcgcggcggaggtgctgacgctgcacggcgagttgccg
gtcgagcagcaatcgcgcgtgctccagcccgaccccgatggccgccgtcgggtggtgctg
gcgaccaacgtggccgagtccagcgtgaccctgcccggcgtgcgggtggtgatcgatgct
ggccttgcccgcgagccgcggttcgatcccaacagcggtttttcccgcctcgatgtcgtg
catgtcgcgcaggcgtcggcggaccagcgcgccggccgcgcggggcgggtggccgagggc
tgggcgtaccgcctgtggccgcaatcgcaacggctggaaccgcagcggcggccggagatc
gcccaggtcgagctggccgggctggcgctggaactggccgcctggggcgatccggacctg
cgtttcgtcgacccgccgccgccgggggcgctggcctcggcgcgcgaactgctgcagcgg
ctgggcgcgctgcagggcgaggcgatcacgtcgctgggccggcgcatgctcgccctcggc
acccacccgcggctggcggcgatgctgctcgcgccgagcgacgcggacgaacgcgcgctc
gcctgcgatcttgcggcgctgctcgaggcgcgcgatcccttgcgcagtcgcagcgatgcg
ctgcacgagcgctggcaggcgctggccggattccgcgccggccgcgtgcccggcgatgcc
tcgcgcagtgcgctggccgcgatcgaccaggccgcccggcagtggcgacggcgtctgcgg
gtcgccgcgccgccgccgtccgggctgcccgcgcaccaattgggcgatctgctggcgcac
gcgttccccgaccgcatcgcccaccagcaccgcagcgatccgtaccgttatcaactggcc
aacggccgcagcgcgcgactgttcgacgacagcgcggtgttcggcgagccgtggctgctg
gtcagcgagttgcgcgacgatccgcgcgatgcgcggatcctgcgggcggtgccgatcgat
ccgctgcggctggagctcgattggccgcagcgtttcgtcgacaccgaccgggtgttctgg
gatgccgacgcgcgtcgcatcgcggcggtgcgcgagcggcgtttcgaccgcatcgtgctg
gacagcaggccgctcgccgcgcccgatcgctcgcgttatgccgaggcgctggtggatgcg
gtgcgccagctcggactggccgcgttgccgtggaccgagggcctgcagcaatggcgcgca
cgggtgcgttgcctgcgcgtgtggtgcccggacctggcgctgccggacctgtccgatgcg
gtcctgctggcaggcctggacgattggctgaaacccgcgctggcgggcaagagccggctc
gatgcgctgaccgaaagcgagttcgccgaagcactgaagtccggcgtggactggtcgctg
cggcagcgcatcgacacgctcgcgccggcccggatcgaggtgccgtcagggctgcagcgg
cggatcgactacggcttcgacgacgcggccgacgtgcccctcgcgccggtgctggcggtc
aagctgcaggagctgttcggcctcgccgacagcccgcgcgtcgccgacgggcggctgccg
ctgaccctgcacctgctgtcgccgggcggccggccgctgcaggtgaccggcgacctgcgc
gggttctgggaacgcacctatccggaggtccgccgggagatgaaaggccggtatccgaag
catccgtggccggacgatccctggacagccacggcgacgcatcgggcaaagccccgcggg
acgtga
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