Lysinibacillus sp. 2017: DCE79_00355
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Entry
DCE79_00355 CDS
T05455
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lyz
Lysinibacillus sp. 2017
Pathway
lyz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lyz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DCE79_00355 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lyz03400
]
DCE79_00355 (mfd)
Enzymes [BR:
lyz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DCE79_00355 (mfd)
DNA repair and recombination proteins [BR:
lyz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DCE79_00355 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
MFD_D3
UB2H
AAA_22
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AWE05955
UniProt:
A0A2S1GX15
LinkDB
All DBs
Position
75369..78878
Genome browser
AA seq
1169 aa
AA seq
DB search
METIHQLFLKDKQIHNFVDQLKNREADGQLVTGLTGSARPALIQTIFKETKKSIYIISSN
LLQAQKLVDDLSALIGEEWVHYYPAEEFIAANMTISSPELRAQRIAALGRLINKERGIYI
IPAAGMRKMLNAPSDWVGFELATSLGQDVDINEWLHKLVEMGYSRSEMVTTPGEFAMRGG
ILDIYPPYAESPIRIELFDTEVDSIRTFSADDQRSIEKLDQVKILPATELLITSDHRLVI
ADRLEASLATSLKKVRKKETQELLIQNIAQDIELLRQGHLPDHIAKYGSLLFDKPHFLGD
YFAQDGLVLFDELGRIQEVMEAWEREESEWFVSLIEEGKMLHEVKPSYALKEILAMLTQQ
KVYFALFTRSFAGVTLKKTTNFSCKPMQQFHGQIALLQNEIERWTHEKFTVLFTAQTNER
IKAMQILLEDYHIPATIGYSDGPGIYLVNTALSVGFELPLQKIAVVTDDELFKQQAKKKT
RPQKMSNAERIKSYTEIKPGDYVVHVHHGIGKYIGIETLVVNNTHQDYLHVRYREDDKLF
VPVDQIELIQRYVPSGEKEPKLHKLGGAEWKKTRAKVSSAVQDIADDLIKLYAKREAEKG
FSFSPDSDEQRSFEAAFPYEETDDQLRTIVEVKRDMERERPMDRLVCGDVGYGKTEVAIR
AAFKAILDGKQVAFLVPTTILAQQHYETISKRFEDHAINVGLLSRFRSKKQQTETIKGLR
EGTVDIVIGTHRVLSKDVAYHDLGLLVVDEEQRFGVTHKEKIKQLRTNVDVLTLTATPIP
RTLHMSMVGVRDLSVIETPPQNRFPVQTYVMEHNGALVREAIEREMARGGQTFYLYNRVE
DITRRVEEIQMLVPDARVAYAHGQMTEAKLESVILSFIEGEYDVLVTTTIIETGVDIPNV
NTLIVHDADRMGLSQLYQLRGRVGRSNRIAYAYFMYERDKVLTEVAESRLQAVKEFTELG
SGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLEEAVEERRSGVKKEEKTEVEI
VLHVDAYIPDAYIPDGYQKIQMYKRIKSMEKMDDYMEIIEELQDRFGDLPVETERLMRIA
RMKVWAAEAGVLSIKEKQLVVSILLSEEGTAFADGAKIVAESMIFGRAVGFGMEGKQLIV
TVDYHKCGNHLPFDVIEQMMEIIATSKKA
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
gtggaaaccattcatcaattatttttaaaagataagcagattcataatttcgttgatcaa
ctaaagaatcgtgaagcggacggtcaacttgttacagggttgacgggtagtgcgagacca
gcgttaatccaaacgattttcaaagaaacaaaaaaatccatttatattatttcatccaac
ttattgcaagcccaaaagctagttgatgatttaagtgcattaatcggagaagagtgggtg
cattattaccctgcagaagaatttattgcggctaatatgacgatttcttcaccagagttg
cgggcacagcgtattgcagcactcgggcgccttatcaataaagaacgaggaatttatatt
attccagcggccggtatgcgcaaaatgttaaatgcaccgagcgattgggtgggctttgag
ttagcaacttcacttggccaagacgtagacattaacgagtggctacataagcttgtagaa
atgggttattcacgtagcgaaatggtcacgaccccaggggaatttgcgatgcgcggagga
attctagatatttatccaccatatgcagagtcacctattcgtattgaactatttgatacg
gaagtggattcgattcgaacattttcagcagatgaccagcgttctattgaaaagttagat
caagtaaagatcttacctgctacagagttactcattacatcagaccaccgattagtcatt
gccgatcgattagaagcgtcgctggcaacgagcttaaaaaaagttcgtaagaaagaaacg
caagagctactgatccaaaatatcgcgcaagatattgaattgcttcgtcaaggtcacttg
ccagatcatattgcaaaatacggctctctcttatttgataaaccgcactttttaggggat
tatttcgcgcaagatgggcttgttttatttgatgagcttggccgaattcaagaagtgatg
gaagcttgggaacgagaagagtcagagtggtttgtatcactgatagaagaagggaaaatg
ctgcacgaagtaaaaccttcctatgcattaaaagaaatactagccatgctgacgcagcaa
aaggtgtattttgccttgtttacacgttcgtttgcaggggtgacattgaagaaaacgacg
aacttctcatgtaagccaatgcaacaatttcacggacaaattgcactattacaaaacgaa
attgaacgatggacacacgaaaaattcactgtattatttacagcgcaaaccaatgagcgt
attaaagcgatgcaaattttactagaagactatcatattccagcaacgatcggttattca
gatggtcctggtatttatttggtgaatacagcgctatcggtaggatttgagttgcctctt
caaaaaatcgccgttgtaacggatgatgagttatttaaacagcaagcaaagaaaaaaacg
cgaccacaaaaaatgtcgaacgccgaacgaataaaatcatataccgaaattaaaccaggc
gattatgtcgtccacgtccaccacgggatcggtaaatacattggcatcgagacattagtc
gtaaataacacacatcaggattatttacatgttcgttatcgtgaagatgataaattattc
gtaccggtcgatcaaattgaactaatacagcgctacgtgccatcaggtgaaaaagagccg
aagctacataagcttggcggtgccgaatggaaaaaaacacgggccaaagtttcaagtgcc
gttcaagatattgcggatgatttaattaagctatatgcaaagcgtgaagcagagaaaggt
tttagtttctctccagattcggatgagcagcgtagttttgaagccgcattcccttatgaa
gaaacagatgatcaattacgcacaattgttgaagtgaagcgcgatatggaacgtgaacgc
ccaatggatcgccttgtttgtggagatgtgggttacggtaaaacagaagtagcgattcgt
gcagcatttaaggcaatactagatgggaagcaagtcgcatttttagtgccgacaacgatt
ttagcacagcaacattatgaaacaatttcaaaacgctttgaggatcatgccattaatgtt
ggtttacttagccgtttccgttcgaaaaaacaacaaactgagacaattaaagggttacga
gaaggtacggttgatatcgtaatcggtacacatcgtgtgttatcaaaagacgtcgcctat
catgatttaggtttactagttgtcgatgaagaacagcgctttggtgtaacacataaagaa
aaaattaagcaattgcgtacgaatgtggatgtattaacgttaacagcgacaccaattcca
cgaacacttcatatgtcgatggtcggtgtacgtgatttatccgtcattgaaacaccacca
caaaaccgtttcccagtacaaacgtatgttatggaacataacggtgcactagtacgtgaa
gccatcgaacgtgaaatggctcgcggaggtcagactttctatttatataatcgtgttgaa
gatattacgagacgtgtcgaagaaattcaaatgctcgttccagatgcccgcgttgcttat
gcacatggtcaaatgacagaggctaagcttgaatcggtcattttatcgtttattgaagga
gagtatgatgtgcttgttacaacaaccatcatcgaaacaggggtcgatataccgaatgta
aatacgttaattgttcatgatgcagatcgaatgggcttatctcagttgtatcaattacgc
gggcgtgtgggtcgttctaatcgtattgcgtatgcttacttcatgtatgagcgtgataaa
gtactaacggaagttgcagagtcacgattacaagcagtaaaagaatttaccgagcttgga
tctggatttaaaatagccatgcgtgacttatcaattcgtggtgccgggaatttacttggc
gcacaacaacatggctttatcgattcagtcggctttgacctttattctcaaatgcttgaa
gaggcagtggaagaacgtcgcagcggtgtgaagaaggaagagaaaaccgaagttgaaatc
gtattacatgttgatgcctatattccagatgcctacattccagacggttatcaaaaaatt
caaatgtacaagcgtattaaatcgatggagaaaatggatgattacatggaaatcattgaa
gaattacaagaccgcttcggagatctaccagtggagactgagcgcttaatgcgaattgca
cgtatgaaggtatgggcagcagaagcaggtgttctatcgattaaagaaaagcagctagtg
gtatcgattttgttatctgaagaaggaacggcttttgcagacggtgcaaaaatcgttgca
gagtcgatgatttttggacgagcagttggctttggcatggaaggtaaacagcttattgtt
acggttgattatcataaatgtggcaatcatttaccgttcgatgtcattgaacagatgatg
gaaatcattgcgacttcgaaaaaagcatga
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