Lysinibacillus sp. 2017: DCE79_05200
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Entry
DCE79_05200 CDS
T05455
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lyz
Lysinibacillus sp. 2017
Brite
KEGG Orthology (KO) [BR:
lyz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lyz03019
]
DCE79_05200
03009 Ribosome biogenesis [BR:
lyz03009
]
DCE79_05200
Enzymes [BR:
lyz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DCE79_05200
Messenger RNA biogenesis [BR:
lyz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DCE79_05200
Ribosome biogenesis [BR:
lyz03009
]
Prokaryotic type
rRNA helicases
DCE79_05200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Flavi_DEAD
NAT10_TcmA_helicase
AAA_19
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AWE06828
LinkDB
All DBs
Position
1159478..1160788
Genome browser
AA seq
436 aa
AA seq
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MSKYTDYNFKPFLQDAIAKLGFTEPTPIQKEMIPLVLKGKSAIGQAHTGTGKTHSFLLPI
VERIVEEKQEVQAVITSPTRELAQQIFDALNQLTEGTKITSKLFIGGTDKQRSIDRLKTQ
PQIVVGTPGRIRDLVKENALLVHTAPILVVDEADLAFDMGFIEEIDGFASVMPDKLEMFV
FSATIPEKLKPFLKKYMDSPVHIHMNDKRPVAEGIDFVLVPVRSKSRNTRLLEVMKGINP
FLAVIFCNTRKNAESVANFLAEQGIRAGQIHGDLSPRDRKKAMKQVRDLEYQYIVATDLA
ARGIDIQGISHVINYELPEDLEFFIHRVGRTARAGSKGTAITLFQPEDEDAVVRIEKMGI
PFVQKDIKNGEWSELKDRHQRASRKSERKEDEIDKKAKALVRKPKKVKPGYKRNMKWEMD
KVKKRERRIKARRNND
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaatatactgattataatttcaagccatttttgcaggacgccattgcaaagctt
ggatttacagaaccgacgccgattcaaaaagaaatgattccactcgtattaaaaggtaag
agtgcaatcggacaagcacatacaggtacaggtaaaacacatagtttcttattaccaatt
gtagagcgcattgtagaagaaaaacaagaagtacaagcagttatcacatcaccaacaaga
gaacttgcgcaacaaatttttgatgcgctaaaccaattaactgaaggtacaaaaatcact
tcaaaattatttattggtggtacagataaacagcgttcaatcgaccgtttaaaaacacaa
ccacaaatcgttgttggtacaccaggacgtattcgtgatttagtaaaagaaaatgcgtta
ttagtacacacagcgccaattttagttgtcgatgaagcagacttagcatttgacatgggc
ttcattgaagaaattgatggatttgcttcagttatgccagataaacttgaaatgtttgtc
ttctcagcgacaattccagaaaagttaaaacctttcttaaaaaaatacatggattcaccc
gttcatattcatatgaacgacaaacgtccagtagcagaaggcattgattttgtattagtt
ccagttcgttcaaaatcgcgtaacacacgcttacttgaagtgatgaaaggaattaaccca
ttcttagcggttattttctgtaacacacgtaaaaatgccgaatcggttgcaaacttttta
gcagagcaaggtattcgcgccggtcaaattcacggggacttaagccctcgtgatcgtaaa
aaagcgatgaagcaagttcgcgatttagaataccaatatattgtagcaacagacttagct
gcacgtggtattgatattcaaggaatttctcacgttattaactatgaacttcctgaagat
cttgaattcttcattcaccgtgttggtcgtacagcacgtgcaggttcaaaaggtactgca
atcacgttattccaaccagaagatgaagatgcagtagtccgtattgaaaaaatgggtatt
ccatttgttcaaaaggacattaaaaatggagaatggtctgaattaaaggatcgtcaccaa
cgtgcaagccgtaaaagtgagcgcaaagaagatgaaatagataaaaaagccaaagcccta
gtacgtaagccgaagaaagtaaaacccggctacaagcgtaatatgaagtgggaaatggat
aaagttaaaaaacgcgaacgtcgtattaaagcgcgtcgtaataacgattaa
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