Lysinibacillus sp. 2017: DCE79_05930
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Entry
DCE79_05930 CDS
T05455
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lyz
Lysinibacillus sp. 2017
Pathway
lyz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lyz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DCE79_05930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lyz03019
]
DCE79_05930
03400 DNA repair and recombination proteins [BR:
lyz03400
]
DCE79_05930
Enzymes [BR:
lyz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DCE79_05930
Messenger RNA biogenesis [BR:
lyz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DCE79_05930
DNA repair and recombination proteins [BR:
lyz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DCE79_05930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Zn_ribbon_Elf1
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AWE06966
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All DBs
Position
1297528..1298967
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AA seq
479 aa
AA seq
DB search
MNLEETLQRYFGYDSFRPGQKEIIQSLLDGQDVVAILPTGMGKSLCYQLPGYLFNKPVLI
VSPLLSLMQDQVDQLKQMGEKRVVALNSFLTQQQKNYALHFLHEYRFIFISPEMLIQPQV
KARLASMELSLIVADEAHCISQWGYDFRPDYLRIGEVISETNRPPILALSATATESVLLD
IGQYLQMKEPFTFKHSVNRPNIHLAKKLFSNKDEKITWILEHVNRTAGPGIIYTQSRAKA
EAISLALLQQNISAAAYHAGKEMQDRQFIQQQFLTGHLQWIVATNAFGMGVHKNDVRQVI
HETMPSTISNYMQEIGRAGRDGESSVAILLYCEGDEQYAKFIVSEDLPKDFHIDRFVQYI
QSGEQPTAMLANGEIPEVAFRVLSYWLERESVEHVKQRMQAIQTKKFDEVTEMQKLIESP
TCMREQVVEYFGQQLEQKQENCCSNCGLELNQLIHERTDEENINDYATWQQRLRQILLR
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgaatttagaagaaactttacaacgctatttcggttatgactcttttagaccaggacaa
aaagaaattattcaaagtttactagatggacaagatgttgtggccattttaccgactggg
atggggaaatcactgtgttatcagctacctggatatctttttaataagcctgttttaatc
gtttcaccgctgctttcattaatgcaagatcaagtcgaccaattaaagcaaatgggtgaa
aaacgtgtggtggcgttgaattcatttttaacacaacaacaaaaaaattacgcattgcat
tttttacatgaataccgttttatttttatttcaccagagatgctgattcagccgcaagtc
aaagcgcggcttgcctcgatggaattatcacttattgtggcagatgaagcacattgtatt
tcgcaatggggttacgatttccgtccggattatttacgaattggtgaagtcatttctgaa
acaaatcgaccaccaatcttagcattatctgcaactgcaacggaaagtgtattactagat
attgggcagtatttacagatgaaagaaccgttcacgtttaaacattcagtgaatcgcccc
aatattcatttagccaaaaaacttttctccaataaggatgaaaaaattacgtggatactt
gagcatgtcaatcgtacggcagggccaggaattatttatacccagtcacgtgcgaaggcg
gaagcaattagtttagcattattgcagcaaaatatttctgcggctgcctaccatgccgga
aaagaaatgcaggatcgtcaatttattcagcaacaatttttaacagggcacttacaatgg
attgttgcgacgaatgcttttggtatgggggttcataaaaatgatgtacgccaagtcatc
catgaaacaatgccatctactatttcgaattatatgcaggaaattggtcgtgctggacgt
gatggggagtcttcggttgcgatccttttatattgtgaaggggacgagcaatacgcgaag
tttatcgtatcagaagatttgccgaaggacttccatattgaccggtttgttcaatatata
caatctggcgagcaaccaacagcgatgcttgcaaatggagaaattccggaagtagctttt
cgtgtcttaagttactggcttgaacgtgaatctgttgaacatgtgaaacagcgcatgcag
gcgattcagacgaaaaagtttgatgaagtaactgagatgcaaaaattgatagaatcacca
acttgtatgcgagaacaagttgtcgaatactttggtcagcagcttgaacaaaaacaagaa
aattgttgctctaactgcggactcgaattaaatcagttaattcatgagagaacagatgaa
gaaaatataaatgattatgcaacttggcaacaaagattgcgtcaaatactattacgatag
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