KEGG   Lysinibacillus sp. 2017: DCE79_12170
Entry
DCE79_12170       CDS       T05455                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
lyz  Lysinibacillus sp. 2017
Pathway
lyz02024  Quorum sensing
lyz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lyz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DCE79_12170
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    DCE79_12170
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lyz03019]
    DCE79_12170
   03036 Chromosome and associated proteins [BR:lyz03036]
    DCE79_12170
Messenger RNA biogenesis [BR:lyz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     DCE79_12170
Chromosome and associated proteins [BR:lyz03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    DCE79_12170
SSDB
Motif
Pfam: Hfq Hfq_1 LSM
Other DBs
NCBI-ProteinID: AWE08098
LinkDB
Position
complement(2490663..2490890)
AA seq 75 aa
MKSTNLQDTFLNQLRKNNTFVTVFLLNGFQLKGLIKSYDNFTVLLETEGKQQLIYKHAIS
TFVPTKNVALTEEEA
NT seq 228 nt   +upstreamnt  +downstreamnt
atgaaatcgacgaacttacaagatacgtttttaaaccaattacgaaaaaataatacattt
gtaacagtatttttattaaacggttttcaattaaaaggtttaattaaatcctacgataac
tttacggtattgttagaaacagaagggaaacaacagttaatttataaacatgcgatttca
acttttgttcctacaaaaaatgttgcgttaacagaagaggaagcgtaa

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