Lysinibacillus sp. 2017: DCE79_16955
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Entry
DCE79_16955 CDS
T05455
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lyz
Lysinibacillus sp. 2017
Pathway
lyz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lyz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DCE79_16955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lyz03019
]
DCE79_16955
03009 Ribosome biogenesis [BR:
lyz03009
]
DCE79_16955
Enzymes [BR:
lyz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DCE79_16955
Messenger RNA biogenesis [BR:
lyz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DCE79_16955
Ribosome biogenesis [BR:
lyz03009
]
Prokaryotic type
rRNA helicases
DCE79_16955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NDK
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AWE08922
UniProt:
A0A2S1H5K8
LinkDB
All DBs
Position
complement(3467022..3468593)
Genome browser
AA seq
523 aa
AA seq
DB search
MTNFSELNISESTLRSIKRMGFEEATPIQEGTVKFAMDGRDVLGQAQTGTGKTAAFGIPL
IEKIDPKNPNIQALVIAPTRELAIQVSEELYKLGFDKRVKLLSVYGGQEIGRQIRALKNH
PQIIVGTPGRIQDHINRRTLRLDEVQTLVLDEADEMLNMGFIDDINAILENVPSTRQTLL
FSATMPPAIRKIAETFMKNPEIVKIKTKELTMENIEQFYVKATDREKFDALSRLLDSQKP
ELAIIFGRTKRRVDELSQALGLRGFIAEGIHGDLSQAKRISVLRQFKEGKIDILIATDVA
ARGLDISGVTHVFNFDIPQDPESYVHRIGRTGRAGKSGIAVTFVTPREMGYLRIVEETTK
KRMTPLRPPSSEEALVGLQEDAMKSLVQLVQNNDLGNYRELAAQLLENNEALDLVAAALK
SITKEPDATPVSLSEERPLPMRRSGNGGGGGGRGRGGNDRGRGGRGGDRRSGNGGGGDRR
REGSASRSGSASRDGGRREGGARREGGSPAPSRDRRPRQRRED
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaatttttcagaattaaatattagtgaatctacattacgttcaattaaacgtatg
ggatttgaagaagcaacaccaatccaagaaggtacagttaagtttgcaatggatggccgt
gacgtattaggtcaggcgcaaactggtacaggtaaaacagctgcatttggtattccttta
atcgagaaaattgatccaaaaaacccaaatatccaagctttagtaattgccccaactcgt
gaattagcaatccaagtttcagaagaactttataaattaggctttgataaacgcgtaaaa
ttattatcagtttatggtggtcaagaaatcggtcgtcaaatccgtgctcttaaaaaccat
ccacaaattattgttgggacaccaggtcgtattcaagaccatattaaccgtcgtacatta
cgcttagatgaagttcaaactttagtattagacgaagcagatgaaatgttaaacatgggc
ttcattgatgacattaacgcgattttagaaaacgtgccatcaactcgtcaaacattatta
ttctctgcaacaatgcctccagcaatccgtaaaattgctgagacattcatgaagaaccca
gaaatcgttaaaattaaaacgaaagaattaacaatggaaaacatcgaacaattctacgtg
aaagcaactgatcgtgaaaaattcgatgcattatctcgtttattagactctcaaaaacca
gaattagcaatcatcttcggccgtacaaaacgccgtgttgatgagctttctcaagcttta
ggtttacgtggtttcatagctgaaggtatccatggtgatttatctcaagcaaaacgtatt
tctgtattacgtcaattcaaagaaggtaaaattgacatcctaatcgcaactgatgttgct
gctcgtgggttagatatctcaggtgtaacacatgttttcaacttcgatattccacaagat
cctgagtcttatgttcaccgtatcggtcgtacaggtcgtgcaggtaaatctggtattgct
gtaacattcgtaacacctcgtgaaatgggttacttacgtatcgtagaagaaactacgaaa
aaacgtatgactcctttacgtccaccatcatctgaagaagctttagttggcttacaagaa
gatgcgatgaaatcattagtgcaattagtacaaaacaatgacttaggtaactatcgtgaa
ttagcagctcagttattagaaaataacgaagcgttagatttagttgctgcagcattaaaa
tcaatcactaaagaacctgatgctacaccagtatcattatctgaagaacgtccacttcca
atgcgtcgtagtggtaatggcggaggcggcggaggccgtggccgtggtggtaatgatcgt
ggtcgtggaggccgtggtggtgaccgtcgtagtggtaatggcggtggtggagatcgtcgt
cgtgaaggtagcgcaagccgtagtggtagcgcaagccgtgatggaggtcgccgtgaaggt
ggtgcccgtcgcgaaggtggaagcccagctccaagtcgtgaccgtcgtcctcgtcaacgt
cgcgaagactaa
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