Companilactobacillus zhachilii: D1B17_09790
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Entry
D1B17_09790 CDS
T06807
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
lzh
Companilactobacillus zhachilii
Brite
KEGG Orthology (KO) [BR:
lzh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lzh03009
]
D1B17_09790 (rlmD)
Enzymes [BR:
lzh01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
D1B17_09790 (rlmD)
Ribosome biogenesis [BR:
lzh03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
D1B17_09790 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Cons_hypoth95
RrnaAD
MTS
Methyltransf_15
Met_10
Methyltransf_25
PrmA
AsnC_trans_reg
DOT1
Methyltransf_32
Methyltransf_12
Methyltransf_11
Methyltransf_24
Motif
Other DBs
NCBI-ProteinID:
AYE38908
UniProt:
A0A386PUQ0
LinkDB
All DBs
Position
658432..659790
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AA seq
452 aa
AA seq
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MEKPNLKKNQEIELDIQDLSYEGKGVAKVDDFTLFVDNALPGEKVKAVITRVNKNFGFAR
TLDVLVESPDRVHDIDAVYAQTGIAPLSHLKYDKQLEFKHNQVVTDLNKIGLKDVTVNPT
LGMKSPFNYRNKAQVPVRQVNGKLTTGFYRRRSHDLVPMENFLIQDPKIDAEIIRVRDIL
RKYNVRGFDEQNQKGQIRTIMVRRAYFTGEMMIVLVSRTPDISHYKDITKEILANPEVKS
LFLNINSKNTNVIFGQKMTLLGGKKYIDDQILGHTYRISPRSFYQVNPVQTQNLYQLAID
KAELTGKENVVDAYSGIGTIGLSLADKAKHVTGIEVIEDAVKDADQNAKLNNITNTDFVV
GKTEDVLDEWAKNDVSVDVLMVDPPRKGLANSLIDSLKNIKPKTIVYISCNPATLARDLE
LLNDTYEIGDVTPVDMFPMTNHIECVTKLTLK
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaccaaatttgaagaagaaccaagaaatagaattagatatccaagacctctcg
tatgagggtaaaggtgtagctaaagttgatgattttacattgttcgttgacaatgcttta
cctggtgaaaaagttaaagctgtaattacacgggtgaataagaactttggttttgctaga
acattggatgttttagtggaatcaccagaccgtgttcatgatattgatgctgtttatgca
caaacaggtatcgccccattgagccatttgaagtatgacaagcaacttgaatttaaacac
aatcaagttgtaacagatcttaataagattggtttgaaagacgttaccgtgaaccctaca
ttagggatgaaatcaccatttaactatcgtaataaggcacaagtacctgtgcgccaagtt
aatggtaaattgacaactggtttctatcgccgtcgttcacatgatttagtaccaatggag
aacttcttgattcaagatcctaaaattgatgccgaaatcattcgtgtccgtgatatttta
cgtaagtacaatgttcgtggctttgatgaacaaaatcaaaagggtcaaattagaacaatt
atggttcgtcgtgcctactttacaggtgaaatgatgattgttctagtttcgagaacacct
gatatttcacactacaaagatattactaaagaaattttggcaaaccctgaagttaagtca
ttgttcttaaatattaactcaaagaataccaacgttatctttggtcaaaaaatgaccttg
cttggtggtaagaagtatattgatgatcaaattcttggccatacataccgcatttcacca
agatctttctatcaagttaacccagttcaaactcaaaacctttaccaattggcaattgat
aaagctgaattgactggtaaggaaaacgttgttgatgcttattcaggaattggtacaatt
ggactttcattggcggataaggctaaacatgtaactggtatcgaagtgattgaagatgcc
gttaaagatgctgaccaaaatgctaagttgaacaacattacaaatactgattttgttgtt
ggtaagactgaagatgtcctagatgaatgggctaaaaatgatgtctcagttgacgttttg
atggttgatcctccacgtaaaggtttggctaattcattgattgattcattgaagaatatt
aaacctaagacaattgtttatattagttgcaacccagcaaccttggcacgtgatttggaa
ttgttaaacgatacttatgaaattggtgacgttacaccagttgatatgttccctatgaca
aaccatattgaatgtgttacaaagttgacattgaagtaa
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