Levilactobacillus zymae: LZ3411_0534
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Entry
LZ3411_0534 CDS
T05206
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lzy
Levilactobacillus zymae
Pathway
lzy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lzy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LZ3411_0534
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lzy03019
]
LZ3411_0534
03009 Ribosome biogenesis [BR:
lzy03009
]
LZ3411_0534
Enzymes [BR:
lzy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LZ3411_0534
Messenger RNA biogenesis [BR:
lzy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LZ3411_0534
Ribosome biogenesis [BR:
lzy03009
]
Prokaryotic type
rRNA helicases
LZ3411_0534
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_30
CMS1
Helicase_RecD
CobA_CobO_BtuR
Motif
Other DBs
NCBI-ProteinID:
SMS13584
UniProt:
A0A1Y6JZ45
LinkDB
All DBs
Position
I:604577..606142
Genome browser
AA seq
521 aa
AA seq
DB search
MKFKELGLSEDLLKAVTEAGYEEATPIQAETIPMVLAGQDVIGQAQTGTGKTAAFALPIL
EKIDKNNPNVQALVVSPTRELAIQTQEEIYKLGRNERANVQVVYGGADIRRQIKSLKNHP
QVVVGTPGRLLDHIRRRTLKLDHVQMLVLDEADEMLNMGFLDDIEDIIKQLPEERQTMLF
SATMPPEIKRVGVQFMQDPKHVKIKAKELTTDLIDQYYVRSRDFEKFDVMTRFFDVQDPD
LTIVFTRTKRRVDEISNGLQARGYNAAGIHGDLTQKRRTQIMNEFRHGKLDILVATDVAA
RGIDINDVTHVYNYDIPQDPDSYVHRVGRTGRAGKHGVSMTFVTPNEMGYLREIEKLTKV
RMLPLKPPSAEEAFVGQLGVAKEAVSDLINKTDTEKYADAAKSLLDEYDAEDLAAALLNA
VTKDDNSQVPVKITPERPLPKRGGKRHGSGGGYHRGGGYHRGGNGGHRGGGEHRHYDRNR
RGGNDRNDRNDRNRGGNRDRRSNGGRRSEGAKHGFTIRKKD
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
ttgaagtttaaagaactgggtctttccgaggacctactgaaagctgttactgaagcaggt
tacgaagaagcgaccccaattcaagccgaaaccatcccgatggtcttggctggccaagat
gtgattggccaggcccaaaccgggactggtaagacggcggccttcgcactccccattctg
gaaaagattgataaaaacaatccgaacgttcaggccttagtggtttccccaacgcgggaa
ctggccatccagacccaagaagaaatctataagttaggccgtaacgaacgggccaacgtc
caagtggtttacggtggggcggatatccggcgtcaaatcaagagcttaaagaaccacccc
caagtcgttgttgggacgcccggtcggttattagaccacatccggcggcggaccttgaaa
ctggaccacgttcaaatgttggtgttagatgaagccgacgaaatgctgaacatgggcttc
ttggacgacattgaagacattatcaagcaattaccagaagaacggcaaaccatgctgttc
tccgccaccatgccacccgaaatcaagcgggtcggtgtgcaattcatgcaagacccgaag
cacgtgaagatcaaggccaaggaattgactacggatctgatcgaccaatactacgtgcgt
tcccgggactttgaaaagtttgacgtcatgacgcggttcttcgacgtgcaagacccagac
ttgaccatcgtcttcacgcggactaagcgccgggtcgacgaaatctccaacgggttacaa
gcccgcgggtataacgccgccggaattcacggggacttgacgcaaaagcgccggacccaa
atcatgaacgaattccgtcacgggaagttggatatcctggtcgcaaccgacgtggctgcc
cgggggatcgatatcaacgacgtgacccacgtgtacaactacgatattccgcaagatcca
gatagttacgttcaccgggtcggccggacgggccgtgccgggaagcacggggtttccatg
accttcgtgacgccgaacgaaatgggttacttacgcgaaatcgaaaagttgaccaaagtg
cggatgctgcctctgaagccaccttcggccgaagaagcctttgtcggtcaattgggcgtg
gctaaggaagccgtttctgatttgatcaacaagacggataccgaaaagtatgcggacgca
gcgaagagcttactggacgagtacgatgctgaagacttagcggcggcgttattaaacgca
gtcactaaggatgacaacagccaggtacccgttaagattacgccggaacggccactgcct
aagcgtggtggcaagcgtcacggtagcggtggtggttatcaccgtggtggcggttaccat
cgtggtggtaacggcggtcaccgtggcggtggcgaacatcggcactacgaccgtaaccgg
cggggcggtaacgaccgcaacgaccggaatgatcggaaccggggcggtaatcgcgaccgg
cgcagcaatggtggtcggcgttccgaaggggccaagcacggcttcacgattcggaaaaaa
gactag
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