Levilactobacillus zymae: LZ3411_1738
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Entry
LZ3411_1738 CDS
T05206
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lzy
Levilactobacillus zymae
Pathway
lzy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lzy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LZ3411_1738
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lzy03019
]
LZ3411_1738
03400 DNA repair and recombination proteins [BR:
lzy03400
]
LZ3411_1738
Enzymes [BR:
lzy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LZ3411_1738
Messenger RNA biogenesis [BR:
lzy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LZ3411_1738
DNA repair and recombination proteins [BR:
lzy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LZ3411_1738
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
SMS14788
UniProt:
A0A1Y6JXZ0
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All DBs
Position
I:complement(1879664..1881439)
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AA seq
591 aa
AA seq
DB search
MDLTAAQGVLKTTFGYDDFRPGQRAVLEHVLTGDNTLAIMPTGGGKSLCYQIPALLFAGI
TVVVSPLISLMKDQVDALNEGGVPATYINSTVAWPEIQDRLAALHQGQYKLLYVAPERLE
SAAFLQALGQLPVDLLAVDEAHCISQWGHDFRPSYLALSTVIQQLPTHPQVLALTATATE
QVASDICQQLAIDPQNEVNTGFERDNLNLTVVKDQDTDRYILDYLHVNADAAGIIYASTR
KEVERLTNMLINHKVAVAMYHAGLPDEVRRQNQEDFLYDRVQVMVATNAFGMGIDKSNVR
FVIHAQVPGTLEAYYQEAGRAGRDGLPSEAILLYRSQDLQIQHFFIDQSEMNETHKQRAY
RKLQVMSQYANTQGCLQQFILAYFGEASQPCGRCSNCQDDREAQDVTTAAQKVLSCVVRL
RSRYGKGIVAQVLTGAKNKRVLDQQLDQLPTYGIMRNQRQKSVGELIDFLTAAGYLQSVG
GQYPTLQVTAAGAGVLKGETPVYRKMARQAQRLAPEDDALFGRLRALRKDLAEEQHVPPF
MIFSDRTLHDMCAVQPQDDASFLSVRGVGASKLAKYGEAFMAAIRADQDDA
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atggatttaacggcggcccaaggggtcttaaaaacgacgtttggatacgatgattttcgg
ccggggcaacgggcggtcttggaacacgtcctcacgggggacaacacgttggccatcatg
cccaccgggggcggtaagtcgttatgttaccagattcccgcgctcttatttgcgggcatc
acggtggtggtctccccgctaatctccttgatgaaagaccaggtcgatgcgctcaacgag
gggggcgttccggcgacctacattaacagcacggtggcctggccggagattcaagaccgg
ctggcggcgttacatcaagggcaatataaattactttacgtcgcgcctgaacgcctggag
tcggcggcgtttttgcaggccttgggacagctccccgttgacctgttagccgtcgatgag
gcgcactgtatctcgcagtggggccacgactttcggccgagctatttggcgctaagcacg
gtgatccaacagttacctacgcacccgcaggtcctggcactgacggccaccgctacggaa
caggtggccagtgatatctgccaacagctggctatcgatccgcaaaatgaggtcaacacg
gggtttgaacgggataacctgaatctcaccgtggtgaaggaccaggatacggaccgctat
attttggattacctacacgtcaacgccgatgcggcgggaatcatttatgccagtacccgt
aaagaggtcgaacgactgaccaacatgttgatcaatcataaggtggccgtggcgatgtat
catgccgggctgcccgacgaggtccgccggcagaatcaagaggactttttgtacgaccgg
gtccaggtgatggtggcgaccaacgcctttgggatgggcatcgataagagtaacgtgcgc
ttcgtgattcacgcgcaagttcccgggacgctggaagcgtactatcaagaagcggggcgg
gccggtcgggacgggctccccagcgaagccatcctgttgtaccggtcgcaagacttacaa
attcaacacttttttatcgaccaatcggagatgaatgagacccacaagcagcgggcttat
cggaaattgcaggtgatgagccagtacgccaatacgcaaggctgtttacaacagttcatc
ctggcgtactttggcgaagcgtcccagccgtgtggacggtgcagtaactgtcaggacgac
cgggaagcccaggacgtgaccacggccgcgcagaaagtactatcttgtgtggtccggtta
cggtcgcgttacgggaagggaatcgtggcccaggttctgaccggagcgaagaacaaacgg
gtcctagatcaacagctcgaccaattaccgacctacggcatcatgcgcaatcagcgccag
aagagtgtcggcgaattgattgatttcttaacggccgccggctatctgcagagcgttggt
gggcagtaccccacgttacaggtgaccgcggccggcgcgggtgtccttaagggggaaacc
ccggtttaccgcaagatggcgcgccaagcgcaacggttggcgccggaagacgatgccctc
tttgggcggttacgggccctgcgcaaggacctagccgaagaacagcacgtgccgccgttt
atgatcttttccgaccgaacccttcacgatatgtgtgccgttcagccgcaagatgatgcc
agttttttgagtgtccggggcgtcggcgctagtaagttggcgaagtacggtgaggccttt
atggccgccattcgggcggaccaggacgacgcctaa
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