Martelella sp. AD-3: AZF01_09830
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Entry
AZF01_09830 CDS
T04332
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
maad
Martelella sp. AD-3
Pathway
maad03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
maad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AZF01_09830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
maad03400
]
AZF01_09830
Enzymes [BR:
maad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AZF01_09830
DNA repair and recombination proteins [BR:
maad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AZF01_09830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
RecG_dom3_C
AAA_22
SecA_DEAD
UB2H
Motif
Other DBs
NCBI-ProteinID:
AMM84615
UniProt:
A0A127CIE6
LinkDB
All DBs
Position
complement(2115585..2119091)
Genome browser
AA seq
1168 aa
AA seq
DB search
MIAGFNPKKLDGLSGAVTIANAVPGTEPLVLAEMARAGQSVAYVLSDGQRIADFEQMLGF
AAPDIPVLTLPAWDCLPYDRVSPGADTSARRLSALSGLIAHAQKPHPAIILVTVNAMLQK
LPPREIVATLGFSARAGQVIDMEVIVRRLTDAGFERVPTVRAVGEYAVRGGILDVFVPGE
ENGLRLDFFGDTLESIRAFDAATQRTIGSVKAFTLNAMSEVTLNDGTIARFRKNYLSLFG
ASTRDDALYQAVSEGRRYAGMEHWLPLFYERLETVFDYLAGFRIIFDHAAREAASERADL
IEDYYEARRTNLGAAHGGQGAPYKPVPPDMLYLDETAFAAGLEASEAVRLSPFNEASSLG
KPVIALEAHAGPRWAVAAQARKGDDGERANVFEEAVRHIADTRAKGGRVLITGWSEGSLD
RLLQVLKEHGLSKIKPIKALSDLQRLSKGEAASAVLSLEGGFETGDLHVIGEQDILGDRL
IRKTRKNRKASDFITEVSGLDEGSLVVHAEHGIGRFTGLRTIEAAGAPRDCLELHYADDA
KLFLPVENIELLSRYGSDAADVPLDRLGGGAWQAKKARLKKRLLDMADELIAIAAKRATR
TAPPLVAAEGLYDEFAARFPYEETEDQYNAIEAVRGDLGLGRPMDRLICGDVGFGKTEVA
LRAAFLAAMNGVQVAVVVPTTLLARQHYKTFIERFRGLPIKVAQASRLVSAKELAQTKKD
LSEGKVDVVVGTHALLGTTIKFANLGLLIIDEEQHFGVRHKERLKELKSDVHVLTLSATP
IPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDPLVIRENLMREHYRGGQSFYVCPR
LSDLEEVQAFLQAEVPELKVAVAHGQMAAGQLEDIMNAFYDGSYDVLLSTTIVESGLDVP
TANTLIVHRADMFGLAQLYQLRGRVGRSKIRAFALFTLPANKRLTDTAERRLKVLQSLDT
LGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEAKGDEDAGGSDWS
PQIGLGTSVMIPESYVPDLNLRMALYRRLGELTDAGDIDAFGAELIDRFGPMPEAVQSLL
KVVFIKSLCRTANVEKLDAGPKGIVVTFRNKEFPNPAGLVQFIAEQSVSAKIRPDQSVFF
NRDLPTPDKRLGQAAIIMNKLSKIAEAG
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgatagccggattcaacccgaaaaagctggatggcctcagcggcgccgtcaccattgcc
aacgccgtgccgggcaccgaaccgctggtgctggcggaaatggcgcgcgccggccagtcc
gtcgcctatgtgctctccgacggccagcggatcgccgatttcgagcagatgctcggcttt
gccgcccctgacattccggtgctgacgctgccggcctgggactgcctgccctatgaccgc
gtttcgcccggcgccgacacctccgcacgccgtctctctgcgctttccggcctgatcgcg
catgcccaaaagccgcatccggccatcatcctcgtcactgtcaatgccatgctgcagaaa
ctgccgccgcgcgagatcgtcgcgacgcttggtttctccgcgcgcgccggccaggtgatc
gatatggaagtcatcgtccgtcgtctgacggatgccggtttcgaacgggtgccgaccgtg
cgggccgtcggcgaatatgcggtgcgcggcggcattctcgatgtcttcgtaccgggagaa
gagaacggactgaggctcgatttcttcggcgacacgctggaatcgatccgcgccttcgat
gccgcgacccaacgcaccatcggctcggtcaaggccttcacgctcaacgccatgagcgag
gtaacgctgaacgacgggaccattgcgcgattccgcaagaactacctgtcgctcttcggc
gcctcgacgcgcgacgatgcgctctaccaggccgtttcggaaggccgccgctatgccggc
atggaacactggctgccgctgttctacgagcgcctggaaacggtgttcgactatctcgcc
ggcttccggatcattttcgaccacgccgcgcgcgaggccgcgagcgagcgggctgacctg
attgaggactattacgaggcccggcgcaccaatctgggcgccgcccatggcgggcagggc
gcgccctacaagcccgtgccgccggacatgctctatctcgatgagacggcatttgccgcc
ggtctcgaagcaagcgaggccgtgcggctttcgccgttcaacgaggcatcatcgctcggc
aagccggtgatcgcgctcgaagcccatgccggcccgcgctgggccgttgccgcgcaggcg
cgcaagggtgacgacggcgagcgcgccaatgtgttcgaggaagccgtccggcatattgcc
gacacgcgcgcgaagggcggcagggtgctgatcaccggatggtccgaggggtcgctcgac
cggttgctgcaggtcctgaaggaacacgggctttccaagatcaaaccgatcaaggcgctc
tccgaccttcagcggctctccaagggcgaggcggcgagcgcggtcctgagcctcgagggc
ggcttcgagaccggcgacctgcacgtgatcggcgagcaggacattctcggcgaccgactg
atccgcaagaccagaaagaacaggaaagccagcgacttcatcaccgaagtttccggactg
gatgaaggctccctggtcgttcacgccgaacatggcatcgggcggttcacgggactgagg
acgatcgaggcggcgggcgcgccgcgcgactgcctggaactgcattatgccgatgatgcc
aagctgttcctgccggtcgagaacatcgagcttctgtcgcgctacggttccgatgccgcc
gacgtgccgctcgaccggctcggcggcggcgcatggcaggcgaagaaggcgcggctgaag
aagcggcttctcgacatggccgacgaactgatcgcgatcgccgccaagcgggcaacccgc
accgcgccgccgctggtggccgccgaggggctttatgacgagtttgccgcccggttcccc
tatgaggagacggaggaccagtataacgccatcgaggcggtgcgcggcgatctcggcctc
ggacggccgatggaccgcctgatctgcggcgatgtcggcttcggcaagaccgaagtggcc
ctgcgcgcagccttccttgccgccatgaacggcgtccaggtggccgtagtggtgccgacg
acgctactcgcgcgccagcactacaagaccttcatcgaacgttttcgcggactgccgatc
aaggtcgcgcaggcttcgcgcctcgtcagcgccaaggaactggcccagaccaagaaagac
ctttccgagggcaaggtcgacgtcgtggtcggcacccatgcgcttctgggcaccacgatc
aaattcgccaatctcggcctcctgatcatcgacgaggagcagcatttcggcgtgcgccac
aaggagcggctgaaggagctgaagagcgacgtgcatgtgctgacgctttcggcgacgccc
attccgcgcacgctgcagcttgccatgaccggcgttcgcgagctctcgctgatcaccacg
ccgccggtcgaccgcatggcggtcaggaccttcatctcccccttcgacccgctggtgatc
cgcgagaacctgatgcgcgagcactatcgcggcggccagagtttttacgtctgtccgcgc
ctttccgatctggaggaggttcaggcctttttgcaggccgaagtgccggaactgaaggtc
gccgttgcccacgggcagatggcggcgggccagctcgaggacatcatgaacgccttctat
gacggcagctatgatgtgctgctgtcaacgacgatcgtggaatccggcctcgatgtgccg
acggccaacacgctgatcgtccaccgcgccgacatgttcggcctggcccagctttaccag
ctgcgcggccgcgtcggccgctcgaagatccgcgccttcgcgctgttcacgctgcctgcc
aacaagcggctgaccgataccgccgagcggcggctgaaggtgctgcagtcgctcgacacg
ctgggcgccggcttccagctcgcaagccacgatctcgatattcgcggcgccggcaatctg
ctcggcgaggaacagtccggccacatcaaggaggtcgggttcgagctttaccagcagatg
ctggaagaagcggtcgccgaggccaagggcgacgaggacgcgggcggcagcgactggtcg
ccacagatcgggctcggaacgtcggtgatgatcccggaaagctacgtgccggacctcaat
ctcaggatggcgctctaccgccgtcttggcgaattgaccgatgccggcgatatcgacgct
ttcggcgccgagttgatcgaccggttcgggccgatgccggaggcggtgcagtcactcctg
aaggtggtgttcatcaagtcgctctgccgcacggcgaatgtcgaaaagctcgatgccggt
ccgaagggcatcgtcgtcaccttccgcaacaaggagttcccgaacccggcgggccttgtc
cagttcatcgccgagcagagcgtctcggcgaagatcaggccggaccagagcgtgtttttc
aaccgcgacctgccgacgccggacaagcgcctcggccaggccgcgatcatcatgaacaag
ctttcgaagattgccgaagccggctaa
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