Mycobacteroides abscessus ATCC 19977: MAB_1157
Help
Entry
MAB_1157 CDS
T00657
Name
(GenBank) Probable transcription-repair coupling factor (TrcF)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mab
Mycobacteroides abscessus ATCC 19977
Pathway
mab03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MAB_1157
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mab03400
]
MAB_1157
Enzymes [BR:
mab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MAB_1157
DNA repair and recombination proteins [BR:
mab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MAB_1157
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
Cas3-like_C_2
ResIII
AAA_22
UB2H
Motif
Other DBs
NCBI-ProteinID:
CAM61245
UniProt:
B1MKF3
LinkDB
All DBs
Position
1169181..1172831
Genome browser
AA seq
1216 aa
AA seq
DB search
MTATTPPLAGVIRTALRDPAFDVLAPAIAAKTGLDLTAPTCARAFVVTGMADASDAPVLV
VTATTREAQDLTAELRDVYGDAVTLLPSWETLPHERLSPGVDTVGARLQVLHRLAHPEDS
RMGVPLRVVITTVRSLLQPMSPELFDLEPVELAVGAELEFDGVIARLVELAYTRVDMVAG
RGEFAVRGGILDVFSPTADHPVRVEFWGDEVSEMRYFSVADQRSIPELQVDSVLAMPCRE
LLLTDQVRARAAELASAAGVSGSEEGHRLGAGVGEMLAKLADGICVDGMESLLPVLHSGK
LTMLVDHLPDHAPVLVCDPEKVRTRAADLERTGREFLEASWSVAAIGSDAPIDVEALADS
GFRELDDVKHAAGEAGYPWWSLSPLGMDNDQAIGLAVRPSPSARGHKEGAAEIFAMLRAH
VMTGGRAAVVAAGAGTTHRIIEQLAETETPATLLEPGAEPAEGVVGVLRGHLTDGVVLTG
ANIVIVTETDLTGSRVAATDGKRLPAKRRNQVDPLALSAGDLVVHDQHGIGRFVEMVERT
VGGARREYLVLEYASGKRGAAAGGQSDRLYVPMDSLDQLSRYVGGESPGLSRLGGSDWTN
TKTKARKAVREIAGELVALYAARQAAPGHAFAPDTPWQREMEDAFGFVETVDQLTAITEV
KSDMEKPVPMDRVVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNR
TAGFPVKVAGLSRFTDPLTSKLVVEGMADGSVDIVIGTHRLLQTGVRWKDLGLVIVDEEQ
RFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP
HDDKQVAAALRRELLRDGQAFYVHNRVSTIDKAAARIRDLVPEARVVVAHGQMPEEMLER
TVQGFWNREYDILVCTTIIETGLDISNANTLIVERADIFGLSQLHQLRGRVGRSRERGYA
YFLYSPEVPLTETAYDRLSTIAQNNDLGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGVGF
DLYVRLVGEAVEAYRAAADGKTVLTAEEPKEVRIDLPVDAHLPTDYIGSDRLRLEAYRRL
AAAADAAQINAAVEELADRYGPLPLPVQRLVAVASLRLLCREMGITDLSVVGTNIRIQPL
PLLDSAQLRLKRLHPAAQYRATTSVVQVPIPRAGDGGVGSDRIRDLELVHMIAELLVALS
GRPAGSVDITPLEVSK
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgactgcgactaccccgcctctcgccggggtgatccggacagccttgcgggatcccgca
ttcgatgttcttgctccggctatcgccgccaagaccggcctcgatctgaccgctccgaca
tgtgcacgcgcatttgtcgtgacgggtatggccgatgcgagcgatgcgcccgtcttggtt
gtgacggccaccacccgcgaggcgcaagatctcaccgccgagctacgcgacgtgtacggc
gacgcggtgacgctgctgccgtcctgggagacgctcccgcatgagcgattgtcacccggg
gtggacacggtgggcgcgcggctgcaggtgctgcaccggttggcccatccggaggattcg
cgtatgggggtaccgctgcgcgtggtgatcaccaccgtgcgctcgctgctacagccgatg
tctcccgagctgttcgacctggagccggtggagctggccgtcggggccgagctggagttc
gacggggtgatcgcgcgtttggtcgagctcgcgtacacgcgggtggatatggtggctggc
cgcggtgagttcgcggtgcgcggtggcattctcgacgtgttcagtcccactgccgaccat
ccggtgcgcgtcgagttctggggcgacgaggtcagcgagatgcgctatttctccgtcgcc
gaccagcgttcgatcccggagctgcaggtcgactccgtgctcgctatgccctgtcgcgaa
ctgctcctcaccgaccaggtgcgggcccgggcggccgagctggcctccgccgccggagtt
tccggtagcgaggaggggcaccggctcggcgccggggtgggggagatgctcgccaaactg
gcagacggaatctgtgtcgacgggatggaatcgcttctgcccgtgctgcattcgggtaag
ctcactatgctggtcgaccatctgccagaccatgcgccagttctggtctgtgaccccgag
aaggttcggacgcgcgcggcggacctggaacgcaccggccgggagttcctggaggcgtcg
tggtcggttgccgcgatcggttcggatgcgccgatcgatgttgaagcactggcagattcg
ggattccgcgaactcgacgacgtcaagcacgcggccggtgaggccggatatccgtggtgg
tcgctgagcccgttgggcatggacaacgatcaggcgatcgggctggcggtgcggccgtcg
ccctccgcgcgtggccataaggagggcgcggcggagatcttcgcgatgctgcgtgcccat
gtgatgaccggcgggcgggcagcggtggtcgccgccggagccggaaccacacaccggatc
atcgaacagttggcggaaaccgaaactcccgcaacgctgttggagccgggtgcggaaccc
gccgagggcgtggtcggagtgctgcgcggtcacctcaccgacggtgtcgtgctcaccggg
gcgaacatcgtcatcgtcaccgagacggatctgaccggtagccgggtcgcggccaccgac
ggtaagcggctgccggccaagcgccgcaaccaggttgatccgctggcgctttccgcgggt
gacctggtggtgcacgatcagcacggtatcgggcgattcgtggagatggtggaacgcacg
gtcggcggagcccgccgggagtacttggtgctggagtatgcctccggcaagcgcggcgcc
gcggccggtgggcagagcgaccgcctgtacgtgccgatggattccctggatcagctgtcc
cggtatgtgggtggtgaatcgcccggcctgagtcggctgggcggtagcgactggaccaac
acgaagaccaaggcgcgcaaggcggttcgtgagatcgcgggcgaactcgttgcactgtat
gcggcgcgccaggccgcgcccggacatgccttcgctccggacaccccatggcagcgcgag
atggaagacgcgttcggattcgtcgagaccgtcgatcagctgaccgccatcaccgaagtg
aaatcggatatggaaaaaccggtcccgatggaccgcgtggtgtgcggcgatgtgggttac
ggcaagaccgaaatcgcggtgcgtgcggcgttcaaggccgtccaggacggtaagcaggtg
gcggtgctggtgcccaccacgctgctcgccgaccagcatctgcagacgttcaccaatcgc
accgccggctttccggtgaaggtggcgggcctgtcgcggttcaccgatccgttgacctcg
aagctggtcgtcgagggaatggccgacggttcggtcgacatcgtcatcggcacgcaccgg
ctactgcagaccggcgtgcggtggaaagacctcggcctggtgatcgtcgacgaggaacag
cggttcggcgtggagcacaaggagcacatcaaggcgctgcgcacccatgtggacgtgctc
accatgagcgcgaccccgattccacgcaccctggagatgagcctggccggtatccgcgag
atgtcgaccatcttgaccccgcccgaggagcgttatccggtgctcacctatgtgggcccg
cacgacgacaagcaggtggcagcggcgcttcgtcgtgagttgttgcgcgatggccaggcg
ttctacgtgcataaccgggtaagcaccatcgacaaggccgccgcgcgcatacgcgacctc
gttccggaggccagagtcgttgtcgcacatggccagatgccggaagagatgctggagcgc
accgtacagggattctggaaccgggaatacgacatcctggtgtgtaccaccatcatcgag
acggggctggacatctccaacgccaacaccctgatcgtggagcgggccgacatcttcggt
ctgtcccagctacaccagctgcgtggtcgtgtcggccgcagccgcgaacgcgggtacgcc
tatttcttgtattcacccgaggtgccgctcaccgagaccgcgtacgacaggctttccacg
atcgcgcagaacaacgatctgggtgccggcatggcggtggccatgaaagacctggaaatc
cgtggcgccggcaatgtgctcggtgtcgagcaatccgggcacgtcgccggggtgggtttc
gatctgtacgtgcgtctcgtcggcgaggccgtcgaggcgtatcgcgctgccgccgacggg
aagacggtgctgaccgccgaggagcccaaggaggtgcgcatcgatcttccggtcgacgcg
catctgcccaccgactacatcggcagcgatcggctgcggctcgaggcataccgtcggctg
gcggctgccgcggacgccgcacagatcaatgccgcggtcgaggagctcgccgaccgctat
ggaccgctgccgctgcccgtgcagcggctggtcgcggtcgcttcgctgcgtttactgtgc
cgcgagatgggaatcaccgatctttccgtggtcggtaccaatattcggatacaaccgttg
ccacttcttgattcggcgcagctgaggctgaagcgtttgcatccggccgcgcaatatcgc
gcgacgacttccgttgtgcaggtgcccatcccgcgtgccggtgacggcggtgtgggttcg
gaccggattcgggacctagagcttgtgcacatgatcgccgagctgttggtcgcgttgtcc
gggcgcccggcgggcagtgttgatataacaccactggaggtgagcaaatga
DBGET
integrated database retrieval system
