Mycobacteroides abscessus subsp. bolletii 50594: MASS_3880
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Entry
MASS_3880 CDS
T02682
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit RpoC
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mabb
Mycobacteroides abscessus subsp. bolletii 50594
Pathway
mabb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mabb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MASS_3880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mabb03021
]
MASS_3880
03400 DNA repair and recombination proteins [BR:
mabb03400
]
MASS_3880
Enzymes [BR:
mabb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MASS_3880
Transcription machinery [BR:
mabb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MASS_3880
DNA repair and recombination proteins [BR:
mabb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MASS_3880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AGM30482
UniProt:
A0AB33AFG9
LinkDB
All DBs
Position
complement(3877525..3881484)
Genome browser
AA seq
1319 aa
AA seq
DB search
MLDVNFFDELRIGLASADDIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITTVDEELRHNELSTLEAEMEVEKKAVADQRDADLEARAQKLEAD
LAELEAEGAKSDVRRKVRDGGEREMRQLRDRSQRELDRLDEIWTTFTKLAPKQLIVDEVL
YRELVDRYGEYFTGAMGAEAVQKLIQNFDLDAEAENLRETIRSGKGQKKLRALKRLKVVA
AFQNSTNSPGGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
AQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYFLTTEIPGDIGAHA
PAGKDQPEVGVYSSPAEAIMAMDRGALSVRAPIRVRLTQQRPPAEVEAELFENGWQPGDA
WVAETTLGRVLFNELLPHGYPFVNKQMHKKVQSAIINDLAERFPMIVVAQTVDKLKDAGF
HWATRSGVTVSMADVLVPPQKAEILDRYEKEAERIEKQYQRGALNQQERRDALVKIWQEA
TDEVGKALEEHYPADNPITLLPKSGATGNMTQVRNLAGMKGLVTNPKGEYIPRPIKSSFR
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCGTERGINVVI
AEKQTGPDGKATLIRDAHIETSAYARTLAADAVDADGNVLVERGHDLGDPAIEKLLAAGV
TTVKVRSVLTCTTGTGVCAMCYGRSMATGKLVDIGEAAGIVAAQSIGEPGTQLTMRTFHQ
GGVGDDITGGLPRVTELFEARVPKGKAPIADVTGRVRLEEGERFYKITIVPDDGGEEVVY
DKLSKRQRLRVFKHEDGSERPLADGDHVEVGQQLMEGAADPHEVLRVMGPRQVQVHLVNE
VQEVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFESENRRVVAEG
GEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKL
IPAGTGINRYRNISVQPTEEARAAAYTIPSYEDQYYSPDFGSNTGAAVPLDDYGYSDYR
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgaactccgtatcggcctcgcgtcggcggatgacatc
cgaaactggtccttcggcgaagtcaagaagccggagaccatcaactaccgcacgctcaag
cccgagaaggacggcctgttctgcgagaagatcttcggacctactcgcgactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgtgccaaggtgcgccgtgagcggatgggccacatcgaactggccgccccg
gtcacgcacatctggtacttcaagggcgttccgtcgcgcctcggctacctgctcgacctg
gcgccgaaggatctcgaaaagatcatctacttcgccgcctacgtcatcaccacggtcgac
gaagaactccgtcataacgagctctcgacgctcgaggccgagatggaggtcgagaagaag
gccgtcgccgatcagcgcgatgccgacctggaggcccgtgcccagaagctcgaggccgac
ctggccgagctggaggccgagggtgccaagtccgacgtgcgccgcaaggtgcgcgacggt
ggcgagcgcgagatgcgtcagcttcgcgatcggtcgcagcgtgagctggaccggctcgac
gaaatctggaccaccttcaccaagttggctcccaagcagctgatcgtcgacgaggtgctc
taccgcgagctcgtcgaccgttacggcgagtacttcaccggtgccatgggcgccgaggcc
gtgcagaagctgatccagaacttcgatctcgatgccgaggccgagaacctgcgcgagacc
atccgcagcggcaaggggcagaagaagcttcgtgcgctcaagcgcctgaaggtggtggcg
gcgttccagaactccaccaactcacccggtggcatggtgctggacgcggtgccggtgatc
ccgccggaactgcgcccgatggttcagctcgatggtggccgcttcgcgacctccgacctc
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgtctcaagcgactgatcgatctg
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtccgtggacgca
ttgttcgacaacggccgtcgtggacgtccggtcacagggccgggcaaccgtccgctcaag
tcgctgtccgatctgctcaagggtaagcagggccggttccgtcagaacctgctcggtaag
cgcgtcgactactcgggccgttcggtcatcgtggtcggtccgcagctcaagctgcaccag
tgtggtctgcccaagctgatggctctcgagctgttcaagccgttcgtgatgaagcgtctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcggatggtggagcgtcagcgt
gcccaggtgtgggacgtcctcgaagaggtcatcgccgagcacccggtgctgctgaaccgt
gcaccaaccctgcaccgcctgggtatccaggccttcgagccgcagctggtggaaggcaag
gcaattcagctgcacccgctggtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcaccttccgctgtcggcggaggcgcaggccgaggctcgcatcctcatgctg
tcctcgaacaacatcctgtcgcccgcgtcgggccgcccgctggccatgcctcgtctggac
atggtgaccggtctgtacttcctgaccaccgagatccccggcgacatcggtgcacacgca
ccggccggcaaggatcagccggaggtcggcgtgtacagctcgcccgccgaggccatcatg
gcgatggaccgcggtgcgctgagtgtccgtgcacccatccgcgtgcggctgacgcagcag
cgtccgccggccgaggtcgaggccgagctgttcgaaaacggttggcagccaggcgatgcc
tgggtcgccgagaccacactgggccgcgttctgttcaacgagctgctgccccatgggtat
ccgttcgtgaacaagcagatgcacaagaaggtgcagtcggcgatcatcaacgacctcgcc
gagcggttcccgatgatcgtggtcgcgcagaccgtcgacaagctgaaggacgccggtttc
cactgggccacgcgttcgggtgtcacggtctcgatggccgacgtgctggtgccgccgcag
aaggcggagatcctggaccgctacgagaaggaagcggagcggatcgagaagcagtaccag
cgtggtgctttgaaccagcaggagcgtcgcgacgcgctggtcaagatctggcaggaagcc
accgacgaggtcggtaaggcgctggaggagcactacccggccgacaacccgatcaccttg
ctgcccaagtccggtgctaccggaaacatgactcaggtacgcaacctggcgggcatgaag
ggtctggttaccaacccgaagggtgagtacatcccgcgtccgatcaagtcctccttccgt
gaaggcctgaccgttctcgagtacttcatcaacacgcacggcgctcgtaagggcttggcg
gacaccgcgcttcgtaccgcggactcgggttacctgacccgtcgtctggtcgacgtctcg
caggacgtcatcgtccgtgagcacgactgcggcaccgaacgtggcatcaacgtggtgatt
gcggagaagcagactgggcccgatggtaaggcgacgctgatccgcgatgcgcacatcgaa
acctccgcctacgcacggactctcgccgctgacgcggtggatgccgatggcaacgtgctg
gtggagcgtggacatgacctgggcgacccggcgatcgagaagctgcttgccgcgggcgtc
acgacggtcaaggttcggtcggtgctgacctgcaccaccggtaccggggtgtgtgcgatg
tgctatggccgctcgatggcgaccggcaagcttgtcgacatcggcgaggcggcgggcatc
gtggccgcgcagtcgatcggtgagcccggtactcagctgaccatgcgtaccttccaccag
ggtggcgtcggtgacgacatcaccggtggtctgccgcgtgtcaccgagctgttcgaggcg
cgtgtgcccaagggcaaggccccgattgccgatgtcaccggacgggtgcgcctggaagag
ggcgagcgcttctacaagatcaccatcgtcccggacgacggtggtgaggaagttgtctac
gacaagctctccaagcgtcagcgcctgcgcgtcttcaagcatgaggacggctccgagcgt
ccgctggccgacggtgaccacgtcgaggtcggacagcagctcatggaaggtgcggccgat
ccgcacgaggtgctccgcgtcatgggtccgcgtcaggtgcaggtgcacctggtcaacgag
gtccaggaggtgtaccgcagccagggtgtgtcgatccacgacaagcacatcgaggtcatc
gtgcgacagatgctgcgtcgcgtgacgatcatcgattcgggcgcaacggaattcctgccc
ggctcgctcaccgagcgtgccgagttcgagtcggagaaccgtcgcgtggtggccgagggc
ggcgagcccgcggccggccgtccggtgctgatgggtatcaccaaggcatcgctggccacc
gattcgtggctgtcggcggcgtccttccaggagaccactcgcgtgctgaccgatgcggcc
atcaactgccgcagcgacaagctgaatggtctgaaggagaacgtcatcatcggtaagttg
atcccggctggtaccggcatcaaccgctaccgcaacatctcggtgcagccgaccgaagag
gcgcgggccgccgcgtacacgatcccgtcctacgaggatcagtactacagccccgacttc
ggttccaacaccggtgctgcggtgccgctggacgactacggctacagcgactaccgctag
DBGET
integrated database retrieval system
