Mycobacteroides abscessus subsp. massiliense CCUG 48898 = JCM 15300: MMASJCM_1422
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Entry
MMASJCM_1422 CDS
T03694
Name
(GenBank) cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mabl
Mycobacteroides abscessus subsp. massiliense CCUG 48898 = JCM 15300
Pathway
mabl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mabl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MMASJCM_1422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mabl03019
]
MMASJCM_1422
03009 Ribosome biogenesis [BR:
mabl03009
]
MMASJCM_1422
Enzymes [BR:
mabl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MMASJCM_1422
Messenger RNA biogenesis [BR:
mabl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MMASJCM_1422
Ribosome biogenesis [BR:
mabl03009
]
Prokaryotic type
rRNA helicases
MMASJCM_1422
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
CMS1
HEM4
adh_short
P-loop_SecA
Surface-like_ins_dom
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BAP96198
LinkDB
All DBs
Position
1411229..1413025
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AA seq
598 aa
AA seq
DB search
MTSTDIPTPDTGDSSAPPADDTVTFADLHIAPEVLRAVSDVGYETPSAIQAATIPPLLAG
SDVVGLAQTGTGKTAAFAIPILSKIDLTSKDTQALVLAPTRELALQVAEAFGRYGAHMPK
LNVLPIYGGQSYVVQLAGLKRGAQVVVGTPGRVIDHLERGTLDLSHLDYLVLDEADEMLT
MGFAEDVERILADTPEYKQVALFSATMPTTIRRLTKKYLHDPVEIKIDAKTSTAENITQR
FIQVAGPRKMDALTRILEVETFEAMIVFVRTKQATEEVADKLKARGFAAAAINGDINQSQ
RERTINALKAGTIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSG
TAVLFVSPRERHLLKAIEKTTGAKLAEEPLPSVEDVNAQRVTKFRDAITAALAAPEVELF
RRLVEDYERDNNVPVADIAAALAVLSRDGEQFLLQPDPPREPRHERGERPDRGPRGERSR
TPGLATYRIAVGKRHKVMPGAIVGAIANEGGLHRSDFGHITIRPDHSLVELPAKLSPKTL
KALENTRISGVLIDLRPAGGPDGARPDRKYTERRRADHKHSDHKRSEAKRPKRAPKKP
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgacctctacagatatccccacgcccgacaccggcgattcgagtgcaccccccgcggat
gacaccgtcaccttcgcggacctgcacattgcccccgaggtgctgcgtgcggtgtccgac
gtggggtacgagacaccctcggccatccaggccgccaccattccgccgctgttggcgggc
tccgatgtggtgggtctggcacagaccggaacgggaaagaccgcggcgttcgcgatcccg
atcctgtcgaaaatcgatctgacctccaaggacacccaggccttggtgctggcgcccacc
cgtgagctggccttacaggtcgccgaggctttcggccggtacggcgcccacatgcccaag
ctcaacgtgctgcccatctacggcgggcagtcgtatgtggtgcagctggccggactcaag
cggggcgctcaggtggtggtcggcacgcccggacgtgttatcgaccacttggagcgcggc
accctcgatctgtcacacctggactacctggtgctcgatgaggccgacgagatgctcacc
atggggttcgccgaggatgtcgagcgcatcttggccgatacccccgagtacaagcaggtg
gctctgttctcggcgacgatgcccaccacgatccgacggctcaccaagaagtatctgcac
gatcccgtcgagatcaagatcgacgcgaagacgtcgaccgctgagaacatcacgcagcgc
ttcatccaggtggccggcccacgcaagatggacgcactcaccagaatcctcgaggtcgag
accttcgaggcgatgatcgttttcgtcaggaccaaacaggccaccgaggaggtggcagac
aagctcaaggcgcggggcttcgcggcggcggccatcaatggcgacatcaaccagtcccag
cgcgagcgcaccatcaacgcgctcaaggcgggaaccatcgacatcctggtggccacagac
gtggcggcgcgcggtctggatgttgagcgcatctcccatgtgctcaactacgacattccg
catgacaccgagtcgtacgtgcaccgcatcggccgcaccggccgtgcgggccgctcgggc
accgcggtgttgttcgtgtcgccgcgtgagcggcacctgctcaaggcgatcgaaaagacc
acgggtgccaagctcgccgaggagccgctgccctcggtcgaggatgtcaatgcccagcgg
gtcaccaagttccgcgatgccatcactgcggcgctcgcggcgccggaggtcgaactcttc
cgccgcctggtcgaggactacgagcgcgacaacaacgtcccggtggccgatatcgcggcg
gcgctggcggtgctgtcgcgcgacggcgaacagttcctgttgcaacccgatccgccgcgt
gagccccgtcatgagcgcggggagcgtcccgaccgtggacctcgtggagagcgttcgcgc
acccccggcctggcgacatatcgcatcgcggtggggaagcggcacaaggtgatgccgggc
gccatcgtgggcgcgatcgccaacgagggcggcttgcatcgcagcgacttcggccacatc
accattcggcccgatcactcactggtcgagctgcctgccaagttgtctcccaagacactg
aaggcattggagaacacccggatctcgggcgtgctcatcgatctgcgccctgccggtggt
ccggacggtgcgcgtcccgaccgcaagtacaccgaacgcagacgcgcggaccacaaacat
tcggaccacaaacgttcggaggcgaagcgtcccaagcgggccccgaagaaaccatga
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