Methanosarcina acetivorans: MA_0720
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Entry
MA_0720 CDS
T00080
Name
(GenBank) hypothetical protein (multi-domain)
KO
K07573
exosome complex component CSL4
Organism
mac
Methanosarcina acetivorans
Pathway
mac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MA_0720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mac03019
]
MA_0720
Messenger RNA biogenesis [BR:
mac03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MA_0720
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
MA_0720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
ECR1_N_2
OB_RRP5_4th
S1
S1_RRP5
HypA
zf-C3HC4_3
Zn_ribbon_PaaD
Motif
Other DBs
NCBI-ProteinID:
AAM04160
UniProt:
Q8TSS5
LinkDB
All DBs
Position
839119..840054
Genome browser
AA seq
311 aa
AA seq
DB search
MIRIRKNKTTRKKLTGPGEGKPVAEKSVPVAAESREQFKGQPRDQPRDQFKGQSRGQSRD
QFKGHSRDQFKGQSRGSRDQSKDQFKGDLGKKRRFPYSKKSPRDRKEIPGFRPPAREPVR
SEEDLEKGGFVLPGELVGTTEEFKSGAGTTVIGGDIYSTATGNVLIDRKSRVVSVKPNTL
TPNILKVGDIVYGKITDVRESGAMVEVAGIEGKENREIVNTRPGDIHVSNVRDSYVKRLS
DEFRPSDIVKARVIDVDRMRLTTSEDSLGVVKAYCSNCRGELVLEGKKLKCPVCNMTETR
KISTEYGKGIR
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atgattagaatccgaaaaaataagactaccaggaaaaaattaacaggccctggggaagga
aaaccggttgctgaaaaatctgttccggtagctgcagaaagcagggaacagtttaaaggc
cagccaagggatcagccaagagatcagtttaaaggtcagtcccgcggccagtccagagac
cagtttaaaggtcattcaagggatcaatttaagggccagtcccgtgggtccagagatcag
tcaaaggatcagttcaaaggtgaccttggaaaaaagagaagattcccatattctaagaaa
tctcccagagataggaaggaaattccggggttcaggcctcctgccagagagcctgtgaga
tccgaagaagacctcgaaaaaggaggttttgtccttcctggcgaacttgtcgggactaca
gaggagttcaaatcgggtgccggaacaacagtaattggtggggatatctattccactgcc
acgggaaatgtgctcattgacagaaaatccagagttgtctcggttaagccaaacaccctt
accccaaatatccttaaggtaggggacatagtttacggcaagatcactgacgtccgagag
tccggggcaatggtggaagttgcaggaatcgaaggaaaagagaacagggaaattgtcaac
acaaggcctggggatatccatgtttcaaatgtgagggactcctatgtaaagagactctca
gatgagttcaggccctctgatatcgtaaaagccagagttattgatgttgatagaatgcgt
cttaccacatccgaagattcccttggagttgtaaaagcttactgctcaaactgcagaggc
gaacttgtcctggaagggaaaaagcttaaatgcccggtctgcaatatgactgaaacccgt
aagatctcaaccgagtacgggaaaggaatccggtaa
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