Methanosarcina acetivorans: MA_1776
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Entry
MA_1776 CDS
T00080
Symbol
rrp42
Name
(GenBank) tRNA nucleotidyltransferase
KO
K12589
exosome complex component RRP42
Organism
mac
Methanosarcina acetivorans
Pathway
mac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MA_1776 (rrp42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mac03019
]
MA_1776 (rrp42)
Messenger RNA biogenesis [BR:
mac03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MA_1776 (rrp42)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
MA_1776 (rrp42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
AAM05182
UniProt:
Q8TGX5
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All DBs
Position
complement(2180850..2181650)
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AA seq
266 aa
AA seq
DB search
MKKMSEIIATLKKDYIYNLMIKGKRQDGRGFKDFRDLKLETNVIVKAEGSAKVTLGNTQV
LVGVKLQTGTPFPDSQDEGVIITNLELNPIASPEFEPGPPREEAIEMARVVDRGIRESGA
IDIKKLCITVGESVWIVFIDVHVLNDDGNIIDASCLAAIAALMTTMVPNEQQGLGEDVPL
AMKEMPVGITIAKIGSKLMVDPSLDEEAVCETKLTIVSSSDGSVAGMQKMGISPLTEAEL
FEAIDLALEKAAELRGLYLEGLAKSE
NT seq
801 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaaagatgagtgaaatcatagccacacttaagaaggactatatttacaacctgatg
atcaaaggtaagcgtcaggacggacgcgggtttaaagatttcagggatctcaagcttgaa
acaaacgttattgtcaaagccgaaggttctgcaaaagttaccctcggaaacacccaggtc
cttgtaggtgtgaagcttcagaccggaactccattcccggattctcaggacgaaggcgtg
attattaccaatcttgagcttaacccgatagcttctcccgaattcgagccagggccaccc
agagaagaagcaatcgaaatggcaagggtcgttgacagagggatcagggaatcgggcgca
attgatataaagaagctttgcataacggttggagaatccgtctggattgtctttatagac
gtccacgtcctgaacgatgacggaaatatcattgatgcatcctgtcttgctgcaattgca
gcactcatgaccaccatggtccctaacgagcagcagggactgggcgaagatgtacccctt
gcgatgaaagagatgcctgtcggtataactattgcaaagataggctcaaagctgatggtt
gacccatcccttgatgaagaagcagtttgcgaaacgaaactgaccatagtttcaagttcg
gacgggtctgttgcaggcatgcagaaaatgggcatttcccctcttaccgaggcagagctg
ttcgaggcaatagacctggcactcgaaaaggcagccgaactcaggggactctaccttgaa
gggcttgcaaaaagtgagtaa
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