Marinobacter sp. CA1: J2887_00670
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Entry
J2887_00670 CDS
T10810
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
maca Marinobacter sp. CA1
Pathway
maca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
maca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J2887_00670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maca03019
]
J2887_00670
Messenger RNA biogenesis [BR:
maca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
J2887_00670
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
UDL05332
LinkDB
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Position
147701..149083
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AA seq
460 aa
AA seq
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MTPDQNDLWFLPLGGTGEIGMNLNLYGHDGQWLMVDCGVTFPRPGRVIADGSVHRAGEPP
VQMADPAFIADRREQLAGLVITHAHEDHIGAVPYLWPLLQCPVYAGRFTAEILRRKLAEF
DLLHRVPIIEVAMGERRCIGPFEVEWLALTHSIPDPSALMIRCPAGNIFHSGDWKLDDDP
VVGHGYSPKTFQALAEEGVDAMVCDSTNATVSGHSTSERALQEGLQAAVAEAEGRVVVTC
FGSNIARLHTLAGVARQTGRYMGLLGRSLINMSGAARATGVWADGDRLINSAHLGYLLRH
EVLAVATGSQAEPRTALTRLAAGNHPDLELEAGDRVIFSARAIPGNEEAIAALIAKLAGQ
GVSVVTAEAANLPIHASGHPASEELEAMYRWVRPTLAIPVHGEAEHLAAHARLARDTGIA
KSLIGRNGDLFMVRPVPGIRRQLVATGRLGFQRGELVPVV
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgaccccggaccagaatgacctgtggttcctgcccctcggcggcaccggcgagatcggt
atgaacctgaacctctacggccacgacggccagtggctgatggtggactgtggtgtcacc
tttccccggccggggcgggtgattgccgatggcagcgtccaccgggccggtgagccgccg
gtgcagatggcggacccagcgtttatcgccgaccgtcgggagcaactggcggggctggtg
atcacccacgcccatgaggatcacatcggcgcggtgccgtacctgtggccgctgctgcag
tgcccggtgtacgccggccgctttaccgccgagatcctgcggcgcaagctggcggagttt
gatctgctgcaccgggtgccgatcatcgaagtggcgatgggggaacggcgctgcattggc
ccctttgaggtggaatggctggcgctgacccactccattcccgaccccagtgcgctgatg
atccgctgcccggcgggcaacattttccacagtggcgactggaagctggacgatgatccg
gtggtgggccatggctactcgccgaagaccttccaggccctggcggaggagggtgtggac
gccatggtctgcgattccaccaacgccaccgtcagtggccactccacctcggagcgggcg
ttgcaggaaggcttgcaggccgcggtggccgaggccgagggccgggtggtggtgacctgt
ttcggcagcaacattgcccgtctccacaccctcgccggggtggcccggcagaccggtcgt
tacatggggctgttggggcgctcactgatcaacatgagcggggcggcacgggcgacgggg
gtgtgggccgacggcgaccgacttatcaattccgcccacctgggctacctgctccgccat
gaggtgctggcggtggccaccggcagccaggccgaaccccgcaccgcgctgacccggctg
gcggcgggcaatcatcccgatctggaactggaggcgggcgaccgggtgatcttcagcgcc
cgagccattcccggcaacgaggaagcgattgcggcgctgattgccaagctcgccggccag
ggggtcagtgtggtcaccgccgaggctgccaacctgccgattcacgcctcgggccaccct
gccagcgaggagctggaagcaatgtaccgctgggtccgcccgaccctggcgatcccggtc
catggtgaggctgagcatctggccgcccacgcccggctggcgcgggacaccggcattgcc
aagagcctgatcggtcgtaatggcgacctgttcatggtgcgcccggtgcctggcattcgc
cgccagctggtggcgacgggacgcctggggtttcagcgcggcgagctggttccggtggtc
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