Marinobacter sp. CA1: J2887_00815
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Entry
J2887_00815 CDS
T10810
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
maca Marinobacter sp. CA1
Brite
KEGG Orthology (KO) [BR:
maca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
maca03016
]
J2887_00815
Enzymes [BR:
maca01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
J2887_00815
Transfer RNA biogenesis [BR:
maca03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
J2887_00815
Prokaryotic type
tRNA splicing ligases
J2887_00815
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
UDL05356
LinkDB
All DBs
Position
complement(184510..185730)
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AA seq
406 aa
AA seq
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MNYEVTTVERGVPIKSWTRGVPFEDKARQQLRNIASLPFIHQWVAAMPDVHLGKGATIGS
VIPTLGAVIPAAVGVDIGCGMMAVKTDLQARDLPDNLAPLRCAIEQAVPHGRSLSRGKRD
KGAWGELPEAVARLWQTQLAERFQVLTDKHRVLKNTNNAHHLGTLGTGNHFIEVCLDEHQ
AVWVMLHSGSRGVGNRIGSHFIELAKKDMERMFIQLPDKDLAYLVEGAENFNDYVEAVGW
AQDYARLNRQIMMQYTLNALAVTLGRPVIGEEEAVNCHHNYVSREHHYGRNVLLTRKGAV
SARKDELGIIPGSMGARSFIVRGLGNQESFCTCSHGAGRVMSRTEARKRVSVAQHSEATR
DVECRKDAGVVDETPSAYKDIDSVMAAQSDLVEIVYTLKQVVCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgaactacgaagtaaccaccgtcgagcgcggcgtaccaatcaagagctggacccgtggc
gtgccctttgaggacaaggcccgccagcagttgcggaacatcgcctcactgccgtttatc
caccagtgggttgccgccatgcccgatgtccatcttggcaagggcgccaccatcggttcg
gtgatcccgaccctgggcgcggtgattcccgccgccgtcggcgtggacatcggctgcggc
atgatggcggtaaagaccgacctgcaggcgcgggacctgccggacaacctggcgccactg
cgttgtgccattgagcaggctgtgccccatggccgctccctgtcccggggcaagcgggac
aagggtgcctggggcgagctgccggaagcggtcgccaggctgtggcagacccaactggcg
gagcgcttccaggtactgaccgacaaacaccgggtgctgaagaacaccaacaacgcccac
cacctgggcacactgggcaccggtaatcatttcatcgaagtgtgcctggacgaacaccag
gcggtctgggtcatgctgcactcgggctcccggggtgtcggcaaccggatcggcagtcac
tttattgaactggccaagaaggacatggagcgcatgttcatccagctgccagacaaggac
ctggcgtatctggtggagggcgcggaaaacttcaacgactacgtcgaggccgtcggctgg
gcccaggactatgcccggctgaaccgccagatcatgatgcagtacaccctgaatgccctg
gcagtcacactgggacgcccggtgatcggtgaagaagaagcggtgaactgccaccacaac
tacgtcagccgtgaacaccactacggccggaacgtgctgctgacccgcaagggcgcggtg
tcggcccgcaaggacgaactgggaatcatccccggcagcatgggcgcccgctcatttatt
gttcgggggctaggcaatcaggagagcttctgcacctgtagccacggcgccggccgggtc
atgtcccgcaccgaggcccgcaagcgggtgtcggtggcgcaacacagtgaggcaacccgg
gatgtggaatgccgcaaggatgcaggcgtggtggatgagacgccgtccgcctacaaggac
atcgactcggtgatggcggcacagagcgacctggtcgagattgtctacacactcaagcaa
gtcgtctgcgtgaaaggttag
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