Marinobacter sp. CA1: J2887_01250
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Entry
J2887_01250 CDS
T10810
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
maca Marinobacter sp. CA1
Pathway
maca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
maca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J2887_01250 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
maca03021
]
J2887_01250 (rho)
03019 Messenger RNA biogenesis [BR:
maca03019
]
J2887_01250 (rho)
Transcription machinery [BR:
maca03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
J2887_01250 (rho)
Messenger RNA biogenesis [BR:
maca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
J2887_01250 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
Spore_III_AA
AAA
S1CSD-TOTE-2
Fungal_virus_P2_C
AAA_25
ResIII
Motif
Other DBs
NCBI-ProteinID:
UDL05436
LinkDB
All DBs
Position
283990..285252
Genome browser
AA seq
420 aa
AA seq
DB search
MNLTELKQKSVPELLDIAQEMGLDNLARSRKQDVIFSILKKHAKSGEDIYGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKDGERYFALLKVSEIN
FDKPDNARNKILFENLTPLFPEERLALEAGNGSTEDLSSRVLDLVSPIGKGQRGLIVSPP
KAGKTLLMQNIAQSITRNNPECHVMVLLIDERPEEVTEMQRTVRGEVIASTFDEPPARHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNVEEGGSLTILATALVDTGSKMDEVIYEEFKGTGNMEVHLDRRIAEKRVYPAMNI
RRSGTRREDLLMAEADIQRVWILRKLLHSMDDDTAALEFLLDKLRETKTNDEFFLSMKRR
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttactgaactcaagcagaaatccgtgcccgaactgctcgatattgcgcaggaa
atgggtctcgacaacctggctcgctcccgcaagcaggatgtcattttttccatcctgaag
aagcacgccaaaagcggcgaagacatctacggtgatggcgtactggagattctgcaggac
ggtttcggctttctgcgctcggcggacgcctcctacctggcgggcccggacgacatctac
gtctctcccagccagatccgtcgattcaaccttcgcaccggtgacaccattgcgggcaag
atccggccgccgaaggatggcgagcgttacttcgcgctgctgaaagtcagcgaaatcaat
ttcgacaagccggacaacgcccgcaacaagattctgttcgagaacctgacgccgctgttc
ccggaagagcgtctggcgctggaagcgggtaacggcagcaccgaggacctgtcatcgcgg
gttctggatctggtgtcgcccatcggcaagggccagcgggggctgatcgtatcgccaccc
aaggccggtaagaccctgctgatgcagaacatcgcccagtccatcacccgcaacaaccct
gaatgccatgtgatggtactgctgatcgatgagcgtccggaggaagtcaccgaaatgcag
cgcactgtgcgcggcgaggtgatcgcgtccacctttgacgaaccgccggcgcgtcacgtt
caggtcgccgagatggtgatcgagaaggccaagcggctcgtagagcacaagaaggacgtg
gtgatcctgctggattccattacccgtctggcccgtgcctacaacaccgtgattccgtcg
tctggcaaggtgctgaccggtggtgtggatgcccacgccctggaaaaacccaagcgcttc
ttcggtgctgcccgtaacgtcgaagaaggtggcagcctgaccatcctggccacggcgctg
gtggataccggttccaagatggatgaggtgatctacgaggagttcaaaggcaccggtaac
atggaagtgcacctggaccgtcgcatcgccgagaagcgagtttacccggcgatgaacatc
cgtcgctccggtacccgtcgtgaggacctgctgatggccgaagccgatattcagcgggtg
tggattctgcgcaaactgctgcactccatggacgacgataccgcggcactggagttcctg
ctcgacaagctgcgggaaaccaagaccaacgacgagttcttcctgtcgatgaagcgtcgg
taa
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