Marinobacter sp. CA1: J2887_01590
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Entry
J2887_01590 CDS
T10810
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
maca Marinobacter sp. CA1
Brite
KEGG Orthology (KO) [BR:
maca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
maca03021
]
J2887_01590 (rapA)
Transcription machinery [BR:
maca03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
J2887_01590 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
SNF2-rel_dom
Tudor_RapA
Helicase_C
ResIII
DEAD
Mce4_CUP1
AAA_34
Motif
Other DBs
NCBI-ProteinID:
UDL05494
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All DBs
Position
351479..354310
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AA seq
943 aa
AA seq
DB search
MDTSDFVVGQRWVSHSDSGLGLGIVTEVSGRRVTLGFPAADEERTYAIDNAPLSRVVFQI
GEQIETFDGEAFTVRAVEDLGGVLLYHADDGGETLQQISEVKLTSVVNFSAPHQRLFAGQ
FDRNGAFRLRVASMQHLDRLRGSPAQGLIGARTQHLPHQIHIAHEVASRFAPRVLLADEV
GLGKTIEAGLIVHYQLHTERARRVLIVVPDSLVHQWLVEMLRRFNLRFTIIDQDHYVSDY
DSDDIELERDNPFEAEQLVLCSLDFLTRNRSAQQDVADADWDLLVVDEAHHLAWSPESAS
PEYQLIERLADQVRGLLLLTATPEQVGVASHFARLRLLDPARFHDLEAFQRQEQDYERIN
QVVRGLLDNPGLPDADQQTTLRAWLGDELDTLLTTEQPVQAIVDALLDRHGTGRVLFRNT
RAAIQGFPQRQPEPVPLACPELYHERRDGRHGLTPETGRDDEEWLAADPRVAWLEQTLTA
LKKEKVVVICAHAETAMALEVYLQLRAGIRSAAFHEHLSLVERDRAAAYFGETEQGAQAL
ICSEIGSEGRNFQFAHHLVLFDLPENPDLLEQRIGRLDRIGQAETIRIHIPYLQGTVQER
QFRWFHEGLNAFAESCAVGVAVKETVATQWQAVIDGEGDLDALVAASHDEAQRLRALLHS
GRDALIELNSCRRPQAEALIARIEEEEAPERVRDFMMEAFDILGVDVEDHSEHADILKPS
EQRNTGHVPDLPEDGLTVTWNRQQALEREDMAFMSWEHPLVAGVLESVTTTDLGKAALAS
MSVKGVAPGTLMLEALFKVHCPAPAALQLSRYLPLSPLRLLVDVNGRDLSEILPHDRLNG
LCSNIRRRTAQAVVPKVRAEVETMVDHAETLADGHLESLREQSQKRVRAFFEPEIRRLEA
LQRANPAIRDEEVAFFRDQLAASEDALARATLSLEGIRVIVTS
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
ttggatacatcagattttgtcgtcgggcagcgctgggtcagccacagtgattccggactt
ggccttggtatcgttaccgaggtttccggccgacgggttacgctcgggtttccagcggcg
gacgaagagcgcacctacgccatcgacaacgccccgctgtcgcgggtggtgtttcagatt
ggcgagcagattgaaaccttcgacggcgaggcgttcacagtaagggcggtggaagacctt
ggtggtgttctgctttaccacgccgatgacggcggtgagacgctgcagcagatctccgaa
gtcaaactcaccagcgtggtgaatttttcggccccgcaccagcggctgtttgccggtcag
tttgaccgcaacggcgcgttccggctgcgggtggcctccatgcagcacctggaccggctg
cggggctcgcccgcccagggcctgattggtgcccgtacccaacatctgccccaccagatc
cacatagcccacgaggtcgccagccggtttgcaccgcgggtgctgctggcggacgaggtt
ggcctgggcaagaccatcgaggcgggtctgatcgtccattatcagctgcacaccgagcgc
gcccgccgggtgctgattgtggtgccggattcgctggtgcaccagtggttggtggaaatg
ctgcggcgcttcaacctgcgcttcaccatcattgatcaggaccattacgtcagcgactac
gacagcgatgacattgagctggaacgggacaacccgtttgaggccgagcagctggtgttg
tgcagtctggacttccttacccgcaatcgctccgcccagcaggatgtcgctgacgccgac
tgggatctgctggtggtggacgaagcccaccatctggcctggagcccggaatccgccagc
cccgagtaccaactcattgaacgcctggcggaccaggttcgcgggctgctgttgctgacc
gcgacaccggagcaggtgggggtggccagccacttcgcccgtttgcggctgctggacccg
gctcgcttccatgacctggaggccttccagcgccaggagcaggattacgaacgcatcaat
caggtggtgcgggggctgctggacaacccgggcctgcccgacgccgaccagcagaccacc
ctgcgggcgtggttgggggatgagctcgacaccctgctgacaaccgaacagccggtgcag
gccattgttgatgccctgctggatcgacacggtaccgggcgggtgctgttccgtaatacc
cgggcggcgattcagggcttcccgcaacgtcagcccgaaccggtgccgttggcgtgtccc
gagctgtaccacgaacgccgtgacggtcgccatggcctgaccccggaaaccggccgggac
gatgaggagtggctggctgccgatccccgtgtggcctggctggaacagaccctgaccgcg
ctcaagaaagagaaggtggtggtgatctgcgcccatgccgaaaccgcaatggcgctggag
gtttatttgcagctgcgtgccggcatccgcagtgcggccttccacgagcacctgtcgctg
gtggagcgcgaccgtgccgccgcctacttcggcgagaccgaacagggcgcccaggcgctg
atctgttccgagatcggcagtgagggtcgcaatttccagtttgcccaccacctggtgctg
ttcgacctgccggagaacccggacctgctggaacagcgcatcgggcgcctggatcgcatc
gggcaggcggagaccatccgcattcacattccctatctacagggaacagtgcaggaacgc
cagttccgctggttccatgaagggctcaatgccttcgccgagagctgtgccgttggcgtt
gcggtgaaggaaacggttgcgacgcaatggcaggcggtgatcgatggggaaggggatctg
gacgcgctggtggcggcctcccatgacgaggcccagcgtctccgcgcgctgttgcacagc
ggccgtgacgcgctgattgaactcaactcctgccgtcgcccccaggcagaggcactgatt
gcccgaattgaggaagaggaagcgccggagcgggtgcgggacttcatgatggaggccttc
gatatcctcggcgtggatgtggaagaccactccgaacatgccgacattctcaagcccagc
gagcagcgcaacaccggccatgtgccggatctgccggaagatggtctgaccgtaacctgg
aaccgccagcaggcgctggaacgagaggacatggcgttcatgagctgggagcacccgctg
gtggcgggcgttctggagtcggtgactactaccgatctgggcaaggcggcgctggcgagc
atgtcggtcaagggggtggcaccgggaacgctgatgctggaggcactgttcaaggtgcat
tgtccggccccggcggcgctgcagctctcccgttacctgccgctgtctccgctgcggctg
ctggtggacgtgaatggccgtgacctgtccgagatcctgccccacgatcgtctcaacggt
ctgtgctccaacatccgccgacgcaccgctcaggcggtggtgcccaaggtgcgggcggaa
gtggaaaccatggtggatcacgctgaaaccctggccgatggccatcttgagagcttgcgg
gaacagtcacagaagcgggtgcgggcgttctttgaaccggaaatccgccgtctggaggcg
ttgcagcgcgccaatccggcgattcgtgatgaggaagtggcgttcttccgcgaccagctg
gcggcgagtgaggacgccctggcccgggccacgctcagcctggagggaattcgggtgatt
gtgacctcgtga
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