Marinobacter sp. CA1: J2887_08275
Help
Entry
J2887_08275 CDS
T10810
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
maca Marinobacter sp. CA1
Pathway
maca03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
maca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J2887_08275 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
maca03400
]
J2887_08275 (mfd)
Enzymes [BR:
maca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J2887_08275 (mfd)
DNA repair and recombination proteins [BR:
maca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J2887_08275 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UDL07315
LinkDB
All DBs
Position
complement(1797658..1801167)
Genome browser
AA seq
1169 aa
AA seq
DB search
MEGVSTVSPTTRLLAPDFPERAADHRYWAGLTGTRSALAIAETARDHDGLTLVITRTTDE
ALQLEQAMRFFLDLGFDEDQPAVTSDGLELLSLPDWETLPYDLFSPHQDITSRRIRTLHR
LPAIRRGVLVVPARTLMHRLPPVNYLQGNTLLLEVGQQLDIDSWRLALEAAGYRHTENVY
EHGEYAVRGAILDIYPMGSALPYRIDLFDNEIETLRTFDPETQRSIDRIERIELLPANEF
PWHKEARSGFRNRWFEQFANADKDAPIYQDITQGITPPGIEYYLPLFFDTTATLFDYLPG
DTRVFTADSLNDAVEQFQSDTLARYEERRHDRLRPILPPATLFLRTEELFAQLKQYPRVT
PIHNTARDAQRTDFCAAESLPDVSMDGRSSAPAARLKQFVANFNGRILICAESSGRREAL
LENLAEHGLKPSTIDNWPSFLQEGQATLAITIAPMEDGLVLDHAQLALVTESALFGQQVL
QRRRREKPTEVNDAGYRDLSELRIGAPVVHIDHGVGRYQGLETISVDGDATEFLTLEYAG
GSKLYVPVASLHLISRYSGADTDTAPLHKLGNERWSQSKQKALEKIRDTAAELLDVYARR
EAREGFKFDHPGDAYRAFAAGFPFEETPDQQAAIEAVLADMTGPQPMDRLVCGDVGFGKT
EVAMRAAFVATHSGKQVAVLVPTTLLAQQHYESFRDRFSDTPVNVELLSRFRSSSQTSKA
VERIESGTADIVIGTHKLLQGDIQFKNLGLVIIDEEHRFGVQQKERLKSLRAEVDMLNLT
ATPIPRTLNMAMGHLRDLSIIATPPARRLSVKTFVRQRDDAMVKEAILREILRGGQVYVL
HNEVNTIEKVAEDLRRLIPEARVGIAHGQMRERELEQIMSDFYHKRFNVLVCTTIIETGI
DIPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKSITSDARKRLEAISE
AQDLGAGFMLATHDLEIRGAGELLGEEQSGQIESIGFTLYMQLLDEAVNAIKEGRTPNAD
LPLSHGTEMNLRIPALIPDDYLPDVHNRLMLYKRIASVSNRDALKDLQVEMIDRFGLLPE
PAKNLMRQSELRIQAEALGIVKVDAGKEWVRLEFGASTPVDPLVLVKKVQQAPDQYRLEG
ASSFAFRLKDASTDGKLTGISDMLGQLSP
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
attgaaggcgtatccacggtctcccccacgacccgcttgctggccccggactttcccgag
cgcgccgccgaccaccgctactgggccgggctcaccggcacccggtccgcgctggccatt
gccgaaaccgcccgcgaccacgacggcctgacgctggtgatcacccgcaccaccgacgaa
gcgctgcagctggaacaggcaatgcggttcttcctcgacctgggattcgacgaggaccag
cccgccgtcaccagtgacggcctcgagctgctgtcgctgccggactgggaaacgctgccc
tacgacctgttctcgccccatcaggacattacctcccgacgcatccgtaccctgcaccgg
ttacccgccattcgccgtggcgtgctggtcgtgccggcgcgaacactgatgcatcgactg
ccgccggtgaactacctgcagggcaacaccctgttgctggaggttggccagcagttggac
atcgacagctggcgcctggcactggaggccgccggctaccggcacaccgaaaacgtctac
gagcacggcgagtacgcagtgcgcggcgccatcctggacatctacccgatggggtcggcg
ctgccctaccggatcgacctgttcgacaacgagatcgagaccctcagaaccttcgatccc
gaaacccagcgttctattgatcgcattgagcggatcgagctgttgccggcgaacgagttc
ccctggcacaaggaagcccgttccggcttccgcaaccgctggtttgagcaattcgccaat
gccgacaaggatgcgccgatctatcaggacatcacgcagggcattacgccgccaggcatc
gagtactacctgccactgttcttcgacaccacggcaacgctgttcgactacctgccgggc
gacacccgggtgtttaccgccgacagcctcaatgacgctgttgagcagttccagagcgac
actctggcccgttacgaggagcgccgacacgatcggttacggcccattctaccgccggcg
accctgttccttcgtaccgaggaactgttcgcccagcttaagcagtacccacgggtgacg
cccatccacaacaccgcccgggacgcccagcgcaccgacttctgcgccgccgaatcactg
cctgacgtctccatggatggccgcagcagcgccccggccgcacgcctgaagcagtttgtc
gccaattttaacggtcgcattctgatctgcgcggaatcctcagggcgccgcgaggcgctg
ctggaaaatctcgcggagcatggcctgaaacccagcaccatcgacaactggcccagtttc
ctgcaggaaggtcaggcaaccctggcaatcaccatcgccccgatggaagacggcctggtc
ctggatcacgcccaactggctctggtcaccgaatccgccctgttcggccagcaggtgctg
cagcggcgccggcgggagaaacctactgaagtcaacgacgccggctaccgcgatctctcg
gaactgaggattggggcaccggtggtgcacattgaccacggcgtgggtcgctatcagggc
ctggagaccatcagtgtcgacggcgacgccaccgagtttcttactctggaatacgccggc
ggctccaagctctacgtcccggttgccagcctgcacctgatttcccgttacagcggtgct
gataccgacaccgcgccactgcacaaactgggcaatgaacgctggagccagtccaagcag
aaggcgctggagaaaatccgcgacaccgctgccgagctgctcgacgtttacgcccgccgt
gaggcccgtgaaggcttcaagttcgaccacccgggtgacgcctaccgagccttcgccgct
ggcttcccgttcgaggagaccccggaccagcaggccgccatcgaagcggtgctggccgat
atgaccggcccccagcccatggaccgcctggtgtgcggtgacgtcggcttcggcaagacc
gaagtggccatgcgggccgcctttgtggccacccattccggtaagcaggtggcggtactg
gtgcccaccacgctgctcgcccagcaacactacgaatcgttccgcgatcgcttctccgac
acgccggtgaatgtggaactgctcagtcgcttccgcagctccagccagaccagcaaggcg
gtggaacgcatcgagagcggcaccgcagatatcgtcatcggcacccacaagctgctgcag
ggcgacatccagttcaagaatctggggctggtgatcattgatgaagaacaccgctttggc
gtgcaacagaaagagcgactgaaatccctgcgcgccgaggtggacatgctaaacctcacc
gccacccccataccccgcaccctcaacatggcaatgggccaccttcgggacctgtccatc
attgccaccccgccggcccgtcgcctgtcggtgaagaccttcgtccgccagcgggacgat
gccatggtcaaagaggcgatcctgcgggagatcctgcggggcggccaggtgtacgtcctc
cacaacgaggtcaacaccattgagaaggtggccgaagacctgcgccggctgattcccgag
gcccgggtgggcattgctcacggccagatgcgggaacgtgagctggaacagatcatgtcg
gatttctaccacaagcgtttcaacgtgctggtgtgcaccaccatcattgaaaccggcatc
gacatccccagtgccaacaccatcatcattgagcgtgccgacaagtttggcctggcccag
cttcaccagctccggggccgggtcggacgctcccaccaccaggcctacgcgtatctgctg
acgccgccacccaagagcatcaccagtgacgcccgcaagcggctggaggccatctccgaa
gcccaggacctgggagccggtttcatgctcgcaacccacgacctggagatccgcggcgcc
ggcgaactgctcggggaagaacagagcggccagatcgagagcatcggctttaccctctac
atgcaactcctggacgaggcagtgaacgcgatcaaggagggccgcaccccgaacgcggac
ctgcccctgagccacggcaccgagatgaacctgcgtatccccgctctgattcccgacgac
tatctgccggacgtgcacaaccgcctgatgctctacaagcgcatcgccagcgtcagcaac
cgtgacgcactgaaggacctgcaggtggaaatgattgatcgctttggcctgctgccggaa
cctgccaaaaatctgatgcgacagtcggaactgcgcatccaggcggaagccctggggatc
gtcaaggtagacgctggcaaggaatgggtgcgacttgagttcggtgccagcacgccggtc
gatccgctggtactggtgaagaaagtgcagcaggcgccggaccagtaccgacttgaaggc
gcgagcagctttgcgttccggctgaaggacgcgtcaaccgatggtaaactcaccggcatt
tccgacatgctgggtcagctgagcccctga
DBGET
integrated database retrieval system
