Marinobacter sp. CA1: J2887_08615
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Entry
J2887_08615 CDS
T10810
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
maca Marinobacter sp. CA1
Pathway
maca03018
RNA degradation
Brite
Enzymes [BR:
maca01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
J2887_08615 (rne)
Messenger RNA biogenesis [BR:
maca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
J2887_08615 (rne)
Ribosome biogenesis [BR:
maca03009
]
Prokaryotic type
rRNA processing factors
J2887_08615 (rne)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
UDL06790
LinkDB
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Position
complement(1870685..1874029)
Genome browser
AA seq
1114 aa
AA seq
DB search
MKRMLINATHPEELRVALVDGQRLFDLDIESSTREQKKANIYKGRITRVEPSLEAAFVDF
GAERHGFLPLKEISKEYFKKSPGQIEGKINIKDVMSEGQEVIVQVDKEERGNKGAALTTF
ISLAGRYLVLMPNNPRAGGISRRIEGEERAQLKEAMSDVQVPKNMGIIVRTAGIGRTSEE
LQWDLDYLVQFWEAITDAAGKRKAPFLIHQESNVIIRAVRDYLRQDIGEVLIDSEVVYED
VLNFVRAVMPSFENKIKLYKDEIPLFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEALV
SIDINSSRATKGHDIEETALQTNLEAAEEIARQLRLRDMGGLIVIDFIDMTPAKHQREVE
NKVRQALELDRARVQVGKISRFGLLEMSRQRLRPSLGETRSEVCPRCNGQGTIRGIESLA
LSIMRLIYEESSKDKTGEVRAIVPVVVATFLLNEKRKQLADIEARQEVSIVVVPAPHLET
PNFEIVRMREDETSSEPVSSYQVAQEYSDREEEEIEVFASREAAPRQEAAVKAIRPTAPA
PSPASVPAAAEQAASEPTSDEGMFRRLGRKIALFFQGEQENEQEEGRQQQADRNQDRRNQ
GRQDRRKSRVAKDEGNRQDKRSGQERRQQESGGQGRNSDDNRSRGGKGSGRDGGGQGQGR
GKGQQGDNRRDGEDRKSGGRNQDRKSRGGKPKDNQADNAGKRDQKGGEDKRGQGDDKRNQ
PQGDDKRRSKPRRQRNRDGSPAETPESTPANRKTARVERHQQDTQPDSSKDLGKDTGKDD
VAKPQPKDDNKPKDQGRKDKAESSNKGKAADKPAAKPGSQQETGKSDDAKTAPASKPDTA
GKQESAPQPLAKAAEESAKDQSAKTDKQPDSAPSTGKQDDSKPADENKPSAKPAEAKSES
QEAVARKDQEPARADKSEAKKDIATEQPSPATKAAGERKAGDTVDATKESSKNADDNAAK
AKDKPAATPAEAKAPAAKVDAGTTPAQTQQAEKAEADTKKPARNAEVKPADSKVDKQEAK
PQPEPTKAPTAEPKAPAAKTADNDAKDSKAPEAKPEAAATPATKAEKADEKPAESKAPKA
DEPPVTPGRAYNDPREVRKRQKAAEEAAKKAEGN
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgatcaatgcaactcacccagaagagttgcgcgttgccctggtggat
ggccagcggctgtttgaccttgatatcgaatccagtacccgcgagcagaaaaaggccaat
atttataagggccgcattacccgggttgagcccagcctggaagccgcctttgtcgatttc
ggcgctgaacgccacggcttcctcccgctgaaggaaatctccaaggaatacttcaagaaa
tcgcccggccagatcgaaggcaagatcaatatcaaggacgtgatgtccgaaggccaggaa
gtcattgtccaggtcgacaaggaagaacgcggcaacaagggcgccgccctcaccaccttc
atctccctcgccggccgctacctggtgctgatgccgaacaacccccgcgccggcggtatt
tcccgtcgcatcgaaggggaagaacgcgcccagctgaaggaagccatgtctgacgtgcag
gtgccgaagaacatgggcatcatcgtgcgcaccgccggcattggccgcacctccgaagaa
ctgcagtgggacctggactacctggtccagttctgggaagcgatcaccgacgccgccggc
aaacgcaaggcgccattcctgattcaccaggaaagcaacgtcatcatccgcgccgtgcgg
gactacttgcgccaggacattggcgaagtactgattgattccgaggtggtctacgaagac
gtgctgaactttgttcgcgcggtgatgccgtcgttcgagaacaagatcaagctgtacaag
gatgaaatcccgctgttcagccgctaccagatcgaaggacagatcgaaaccgcgttccag
cgcgaagtaaaactgccatccggcggctcgatcgtcatcgatcccaccgaagccctggtg
tccatcgacatcaactcttcccgcgccaccaaaggccacgatatcgaagagacggccctg
cagaccaacctggaggccgctgaagagatcgcccgccagctgcgtctgcgagacatgggc
ggcctgatcgtgatcgactttatcgacatgacccccgccaagcaccagcgcgaagtggag
aacaaggtccgtcaggcactcgagcttgatcgcgcccgggtgcaggtcggcaagatttcc
cgtttcggcctgctggagatgtcacgccagcgcctgcggccctcactcggcgaaacccgc
agtgaagtctgcccacgctgtaatggtcagggcaccatccggggcattgagtctcttgct
ctcagcatcatgcgcctgatctacgaggaatcctccaaggacaagaccggcgaggttcgc
gccattgtgccggtggtggtcgccaccttcctgctcaacgagaagcgcaagcaactggcc
gacatcgaagcccgccaggaagtcagcattgtcgttgtgcctgcgccccacctggaaacc
ccgaatttcgagatcgtaaggatgcgggaagacgagaccagcagcgagccggtctccagc
taccaggtagcccaggaatactccgaccgggaagaagaagagatcgaagtcttcgccagc
cgcgaggcggcaccacgccaggaagcggccgtaaaggcgattcgcccgactgcgccggcc
cccagccccgcgtctgtgccagccgctgcagaacaagccgccagcgagccaacatcggac
gaaggcatgttccgtcgcctgggtcgcaagattgcgctgttcttccagggtgagcaggaa
aacgaacaggaagaaggccgtcagcaacaggctgaccgcaaccaggatcgtcgcaatcag
ggccgccaggaccgccgcaagtcacgggtcgccaaagacgaaggcaaccgccaggacaag
cgcagcggccaggagcgccggcaacaggagtccggcggccagggccgcaacagcgacgac
aaccgcagccgtggcggtaaaggcagcgggcgtgacggtggcggccagggccagggccgt
ggcaagggccagcagggcgacaaccgtcgcgacggcgaagaccgcaagtctggtggccgc
aatcaggatcgcaagtcccgcggcggcaagccgaaggacaaccaggcggacaacgccggc
aaacgcgaccagaaaggtggtgaagacaagcgcggccagggcgatgacaagcgcaaccag
cctcagggtgacgacaagcgtcgcagcaagccccgtcgccagcgcaaccgcgacggctct
cctgccgagacaccagagtcaactccggccaaccgcaagaccgcacgggttgagcgccac
cagcaggacacccagccagactccagcaaggaccttggcaaggataccggcaaggacgat
gtagccaagccccagccaaaggatgacaacaagcccaaggatcagggtcgcaaggataaa
gctgagagcagcaacaaaggcaaggcagcggacaagccagccgccaagcctggcagtcag
caggaaaccggcaagtccgacgacgccaagaccgcccctgccagcaagccggacactgcc
ggcaagcaggagagcgcacctcagcccctggcaaaggctgcggaagaatcggcgaaggat
cagtccgccaaaactgacaaacagcccgactccgccccgtcgacaggcaagcaggacgac
agcaaaccggctgacgagaataagccctctgccaagcctgccgaagccaagtccgaaagc
caggaagcggtcgcccgcaaggaccaggaaccggcccgtgccgacaagtctgaggcgaag
aaggacatcgctaccgagcagccgtcaccggcgaccaaggcagccggtgagcgcaaagcc
ggcgatacggtggacgcaaccaaggaatcgtcaaagaacgccgacgacaacgcagccaaa
gcgaaagacaagcctgcggccacaccagccgaagccaaggcgcctgccgcaaaagtcgac
gccggcaccactccggctcagactcagcaagcagagaaagctgaggctgacactaaaaaa
ccggcccgcaacgccgaggtgaagccagcggacagcaaggtcgacaagcaggaagccaag
ccccagcctgaaccgaccaaggcaccgaccgctgagcccaaagcgccagccgcgaaaact
gcggacaatgacgccaaggacagcaaggcccctgaggccaaaccggaggcagcagccaca
cctgccaccaaggcggaaaaagctgacgagaagccggctgaaagcaaggcgccgaaagcc
gatgaaccaccggtaacaccaggccgcgcctacaacgatccaagggaagtgcggaaacgt
cagaaagcagcagaagaagctgccaagaaagccgaggggaactaa
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