Marinobacter sp. CA1: J2887_09295
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Entry
J2887_09295 CDS
T10810
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
maca Marinobacter sp. CA1
Pathway
maca03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
maca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
J2887_09295 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
maca03400
]
J2887_09295 (recD)
Enzymes [BR:
maca01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
J2887_09295 (recD)
DNA repair and recombination proteins [BR:
maca03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
J2887_09295 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
AAA_11
Viral_helicase1
AAA_22
SH3_13
Helicase_RecD
UvrD-helicase
SLFN-g3_helicase
AAA_28
NTPase_1
nSTAND3
EAD2
AAA_25
CbiA
TrwB_AAD_bind
T2SSE
AAA_16
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
UDL06913
LinkDB
All DBs
Position
2029775..2031985
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AA seq
736 aa
AA seq
DB search
MSEQRIDARAVLGQTESLMAVLEQWVALGWLRPLDSALARFLDDEASAAGQPASPLLLLA
AALTSHQLGRGHVCLDLALMAREGFNDALSLPPEDDDNPHRHWLPSELLAGIGDRDWAQA
LDHPLLVSVDDQADGQRPLVHHGSRLYLKRYWDYEQGVFQQLATRLRPLATLEDPNGSGA
RVLAQALAALFPGTAAAVDWQRVACGNAARQGFSVITGGPGTGKTTTVVKLLAALQAVAI
AGADGNAAGRALRIRLAAPTGKAAARLNESIAGAVSGLDLTGLPEGEAVRETIPSEVTTL
HRLLGSIPGSRKFRHHRDNPLLVDVLVVDEASMVDLEMMARTLEALPAGGRLILLGDKDQ
LASVDAGAVLGELCQRARQARYTPATVAWLQAVTGDRVDHALVDDSGCRLDQAITLLRHS
YRFDAASGIGQLARVVNDPEPGSPAMAQARRILDAGYADLAWVPLGQDTDERMARHCING
GAEQFPNDGQGRPQRDQPMPPPDGYRYYLEVMRDQQPAAEAGITAWDDWAAGVLAAYGRF
QLLCALRRGPFGVEGLNPLIANGLRQAGLIRSAEGWFPGRPVLVTRNDYSLGLMNGDIGI
ALELPARQWVAGEERVDPAHLVTRVAFPAMDGGVRWVLPSRLQEVETVFAMTVHKSQGSE
FEHTCLVLPDRLNPVLTRELVYTGITRARSWFSLLLPDQQVLAEALERRVTRTSGLGEWL
LSASRLTDVRSGPASD
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagcaacggatcgacgcccgggctgtcctcggccagaccgaatccctgatggcg
gtgctcgagcagtgggtggccctgggttggctacgtccgctggattcagccctggcgcgc
tttcttgatgatgaggccagcgccgccggtcagccggcatcgcccctgctgttactggcg
gcggccctgacctcgcaccagttgggccgtggtcacgtctgtctggatctggccctgatg
gcccgagagggcttcaacgatgccctgtcgctgccgccggaagacgatgacaatccccac
cgacactggctgccttccgagctgctggccggcattggcgaccgcgactgggcccaggcg
ctggatcatccattgctggtgtcggtggatgaccaggccgacggccagcgaccgctggtg
caccatggcagccgtctgtacctgaaacgctattgggattacgagcagggggtattccag
caactggccacccggcttcgcccgctggcgacgctggaggaccccaacggctccggcgcc
agagtgctggcgcaggcgcttgcggcgctgttcccgggtacagcggcggcggtggactgg
cagcgggtggcctgtggcaatgccgcccgccagggcttcagtgtcattaccggcggtccc
ggcaccggcaagaccaccaccgtcgtcaaactgctggcggcgctgcaggccgtagccatt
gccggcgcggatggcaacgctgccggtcgcgccctgcgcatccggttggcggcgccaaca
ggcaaggccgccgcccggctcaacgaatccattgccggtgcggtgtcaggtctggacctg
acggggctgcccgagggcgaggcggtgcgggagacgattccctccgaggtgacgacgctg
catcggttgttgggcagcattcccggttcgcgcaagttccggcaccatcgcgacaacccg
ctgttggtggatgtgctggtggtggatgaggcctccatggtggatctggaaatgatggcc
cgcaccctggaggcactgcctgctggcggtcgcctgatcctgctcggcgacaaggatcag
ctggcgtcggtggatgccggggcggtgctgggcgagctgtgtcagcgggctcggcaggcc
cgctacaccccggcgaccgtggcctggctgcaggcggtgactggggatcgggtagatcac
gcattggtggatgacagcggttgccggctggatcaggccattaccctgttgcggcacagt
taccgcttcgatgctgccagtggtattggccagctggcgcgggtggtgaatgacccggag
ccgggcagccccgccatggctcaggcccgacgcatactggatgccggctatgccgacctg
gcgtgggtgcccctgggccaggacactgacgaaaggatggcacggcactgcatcaatggt
ggtgccgagcagtttcccaacgacggccaggggcggccacagcgcgatcagccgatgccg
ccaccggatggctaccgctactacctggaggtcatgcgcgaccaacagccggcggctgag
gcgggaatcaccgcctgggatgattgggctgccggcgtgttggcggcgtatggtcggttc
cagctgctgtgcgcgctccggcgaggccctttcggagtagaggggctcaacccgttgatc
gccaatggcctgcggcaggccgggttgatccgctccgcggaaggctggttccccggccgg
ccggtactggtcacccgcaacgattacagcctggggctgatgaacggggatatcggtatt
gccctggaactgccggcacggcagtgggttgcgggcgaggaacgggtcgatccggctcac
ctggtcacccgggtggcgtttccggcgatggatggcggcgttcgctgggtgctgccaagc
cgtctgcaggaggtggaaaccgtgtttgcgatgacggtgcacaagtcccagggctcggag
tttgagcacacctgcctggtgttgcccgaccggctcaacccggtattgacccgggagctg
gtctacaccggcatcacccgggcccgcagttggttcagcctgttgctgccggatcagcag
gtgctggccgaggcccttgagcgccgggtaacccgcacctccgggttgggtgagtggctg
ctcagcgcatcgcgtctaacagacgttcgttcaggtcctgccagcgactga
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