Marinobacter sp. CA1: J2887_13190
Help
Entry
J2887_13190 CDS
T10810
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
maca Marinobacter sp. CA1
Pathway
maca03030
DNA replication
maca03430
Mismatch repair
maca03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
maca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J2887_13190 (dnaE)
03430 Mismatch repair
J2887_13190 (dnaE)
03440 Homologous recombination
J2887_13190 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
maca03032
]
J2887_13190 (dnaE)
03400 DNA repair and recombination proteins [BR:
maca03400
]
J2887_13190 (dnaE)
Enzymes [BR:
maca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
J2887_13190 (dnaE)
DNA replication proteins [BR:
maca03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
J2887_13190 (dnaE)
DNA repair and recombination proteins [BR:
maca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
J2887_13190 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
UDL03685
LinkDB
All DBs
Position
complement(2894225..2897716)
Genome browser
AA seq
1163 aa
AA seq
DB search
MESTLPDTFVHLRVHSEYSMVDGLVRVKPLIGRVADMGMPAVGLTEQSNLCSLVRFYKAA
VGAGVKPIIGADLWVENPDDPEVPFRLTLLARNQTGYLHLTEIISRGYTEGQRYGKPIIQ
RAWLEEKAAGLIALSGAKMGDVGKALLAGKTDLARERARYWMSLYPQAFYLELQRTGRPG
DEDCLHHSVALAAELGCPVVATNDVHFLAPEDFEAHEARVCIGESRTLDDPRRDRRFSDQ
QYLRSAEEMIELFSDIPEAVENTVEIARRCSVKVRMGEYFLPNYPIPDGMTMDDYFRQVS
EEGLEGRLETILSKDDPAYDDKRAAYYKRLNFELDIIIQMGFPGYFLIVMDFIKWAKNNG
VPVGPGRGSGAGSLVAYALLITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMEGRDRVI
DYTAEKYGREAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKLIPFEPGMTLERAI
AEEPQLKEFLEQDEEAQEIWEMALKLEGVCRNAGKHAGGVVIAPTKITDFSALYCDDEGG
SLVTQFDKGDVEDAGLVKFDFLGLRTLTIIKWALNMINPRRSTRGEDELDISAIPLDDKP
SFEMLKRAETTAVFQLESRGMKDLIRRLQPDSLEDMIALVALFRPGPLQSGMVDDFIDRK
HGRQPMSYPHPDYQYQGLQPVLEPTYGVILYQEQVMQIAQVMAGYTLGGADMLRRAMGKK
KPEEMAKQKAIFLDGCENNGIDKTLAENIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK
AHYPAEFMAAVLTADMQNTDKVVTLVEECRNMKLDLLVPDVSRSEYTFTVNDNGQIVYGL
GAIKGLGEGPIQSVVEGRTDGPYQDLFDFCARVDLKKINKRALEALIRSGAMDKLGASRA
QLMASIDKALQQANQQSRNESAGMVDMFGDMLAGGDGGNPYEDVTGVREWPEKERLKGEK
DTLGLYLTGHPFDEYEKEVRRFVRCAIADLKPNKSPQRVAGLVVAQRTMKTKTGSTMCFI
TLDDRSARIEATLFSEAFIENRELLGSDQVIVVEGQVSHDDYSGQMKMRVSTVMDVATAR
QRFSRGLKLSLHADQLQNGLLDRLDGLLRPCRCDGSPVWVDYQSQDAATRIELGDSWRVE
PNDELLWELKHLVGDRGVELVYD
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaaccttgcctgatacctttgtacacctccgtgtccactccgagtactccatg
gtggacggcctggtccgggtcaaaccgctgataggccgcgtcgcggacatgggcatgccc
gctgtgggcctgaccgagcaatcaaacctgtgttccctggtgcgtttctacaaggccgct
gtgggtgccggggtgaagcccatcatcggcgccgatctctgggtggagaacccggatgat
ccggaagtgccgttccgtctgaccctgttggcccgcaaccagaccggttacctccatctc
accgagatcatttcccgtggttacaccgaaggccagcgctacggcaaacccatcatccag
cgtgcctggctggaggagaaagcggccgggctgatcgccctgtccggcgccaagatgggg
gacgttggcaaggccctgctggcgggcaagaccgacctggcccgggagcgggcgcggtac
tggatgtcgctctatccgcaggcgttttatctggagctgcagcgtaccgggcgaccgggg
gatgaggactgtctgcatcacagcgtggccctggccgctgagttgggctgcccggtggtg
gccaccaatgacgttcacttcctggcgccggaggatttcgaggcccacgaggcccgggtc
tgtatcggtgagagccgaaccctggatgatccgcgccgggatcgccgattcagcgaccag
cagtacctgcgcagcgcggaggagatgatcgagttattctctgacatccccgaagcggtc
gagaacacggtggagattgcccgccgctgttcggtgaaagtgcggatgggggagtacttc
ctgcccaactacccgatccctgacggcatgaccatggatgactacttccgccaggtgtcg
gaagaggggctggaagggcgcctggagaccattctcagcaaggacgacccggcgtacgac
gacaagcgtgcggcctactacaagcggctcaacttcgagctggacatcatcatccagatg
gggttcccgggctactttctgatcgttatggacttcatcaagtgggccaagaacaacggc
gtgcccgttggcccggggcgaggctccggtgccggctccctggtggcctatgcgctgctg
atcaccgatctggacccgctggaatacgacctgctgttcgagcgattcctcaacccggaa
cgggtctccatgcctgactttgacgtcgacttctgtatggaagggcgggaccgggtcatt
gactacaccgccgagaagtacggtcgtgaggcggtgtcccagatcatcaccttcggaacc
atggccgcgaaggcggtggtgcgcgacgttgcccgggttcagggcaagtcatacggactg
gcggacaagctgtccaagctgatccccttcgagccggggatgacgcttgagcgtgcgatc
gcggaggagccgcagctcaaggaattcctggagcaggacgaagaagcccaggaaatctgg
gagatggccctcaagctcgagggggtctgccggaacgccggtaagcacgccggtggggtg
gtcatcgcacccaccaagatcaccgacttttccgccctgtactgtgatgatgagggcggc
agcctggtcacccagttcgacaagggggacgtggaagacgccggtctggtgaagttcgac
ttcctcggtctgcggacgctgaccatcatcaagtgggcgttgaacatgatcaacccgcgc
cgttccacgcgtggggaagacgagctggacatcagtgccattccactggatgacaagccg
tcgttcgagatgctcaagcgagctgagaccaccgcggtattccagctggaatcccggggc
atgaaggacctgatccgccgcctgcaaccggactccctggaagatatgatcgccctggtg
gcgctgttccgtccggggccgctgcagtctggcatggtggacgacttcatcgaccgtaag
cacggccgccagccgatgtcctatcctcacccggattaccagtatcaaggcctgcaacca
gtgctggagccgacctatggggtcatcctctaccaggaacaggtcatgcagattgcccag
gtgatggctggctataccctggggggcgccgacatgctgcggcgggcaatgggtaagaaa
aagccggaggagatggccaaacagaaggccatcttcctggatggctgtgagaacaacggc
atcgacaagaccctggcggagaacatctttgacctggtggaaaagttcgccggctacggc
ttcaacaaatcccactccgcggcgtacgccctggtgtcctaccagaccctgtggctgaag
gcgcattatcccgccgaattcatggccgcggtactcactgccgatatgcagaacaccgac
aaggtggtgacgctggtggaagagtgtcgcaacatgaagctcgacctgctggtgccggat
gtcagtcgctccgagtacaccttcacggttaacgacaacggccagattgtctatggcctc
ggggccatcaaggggctcggggaaggcccgatccagagcgtggtggaaggccgcaccgat
ggtccctatcaggacctgtttgatttctgcgcccgggtcgatctcaagaagatcaacaag
cgggccctggaggcgctgatccgctccggcgccatggacaagctgggagccagccgtgcc
cagttgatggccagtatcgacaaggccctgcagcaggccaaccagcagtcccgcaacgaa
tcggcgggcatggtggatatgtttggcgacatgctggccggcggtgacggcggcaacccc
tacgaggacgtcaccggtgtacgggagtggccggagaaggagcgcctgaaaggtgagaaa
gacaccctcgggttgtacctcaccggtcatccgtttgatgagtatgagaaagaagtgcgt
cggtttgtccgctgcgccattgccgacctcaagcccaacaaatcgccacagcgggtcgcc
ggactggtggtggcccagcgcaccatgaagaccaagaccgggtccaccatgtgcttcatc
accctggacgaccgcagtgcccgcatcgaagccaccctgttctccgaggcctttattgag
aatcgtgagctgctgggatcggatcaggttatcgtggtggaagggcaggtcagtcacgac
gattactccggccagatgaaaatgcgggtcagtaccgtgatggacgtcgccacggcgcgt
cagcggttcagtcgcgggctgaaactgtcgttgcatgccgaccaactacaaaatggtctg
ctcgacaggctggacggcctgctgcgaccatgccgctgtgacggcagcccggtgtgggtg
gattaccagagccaggatgcggccacccggatagaactgggcgacagctggcgggttgag
cccaatgatgaattgctctgggaactcaagcacctggtgggcgaccggggggtggaactg
gtctatgattga
DBGET
integrated database retrieval system
