Marinobacter sp. CA1: J2887_16660
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Entry
J2887_16660 CDS
T10810
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
maca Marinobacter sp. CA1
Pathway
maca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
maca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J2887_16660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maca03019
]
J2887_16660
03009 Ribosome biogenesis [BR:
maca03009
]
J2887_16660
Enzymes [BR:
maca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J2887_16660
Messenger RNA biogenesis [BR:
maca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J2887_16660
Ribosome biogenesis [BR:
maca03009
]
Prokaryotic type
rRNA helicases
J2887_16660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
ResIII
CMS1
AAA_19
Cas3-like_C_2
AAA_22
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
UDL04313
LinkDB
All DBs
Position
3648293..3649813
Genome browser
AA seq
506 aa
AA seq
DB search
MSTESFAELGLDAAVLEAVTAIGYETPSPIQAQSIPILLGGKHLLGIAQTGTGKTAAFAL
PLLSRIDASSNHPQILVLTPTRELAIQVAEAFNSYASRFRDFHVLPIYGGQDFYPQLKAL
KRGAQVIVGTPGRTLDHLRRGTLKLDRIKALVLDEADEMLRMGFIDDVEAILAATPADCQ
RALFSATMPPQIRKVAQTYLSDAQEVKIESQTRTVERISQFMLPVYAERKLDALTRILEV
EPFDAAIIFVRTKAETALLADKLSARGHAVAPLNGDLNQRQREQTVEDLKRGKKDIVIAT
DVAARGLDVPRITHVINYDVPYDSEAYIHRVGRTGRAGRSGKAILLVTPRERSWLRTLER
ATNSPMEAYQLPSPADLLKLREQQFESQLLGFVEDPKLAKAMALLDDIAERNDMDIAMLA
AALACGMEAGQPGLLPLEQPADLPIPSAAPRRKQGGGGRPHDKRRGPRPGQKPGFKKGPK
GRGRPDGYKGKSGGGSNGGRQSDRRR
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgtctacagaatcctttgccgagcttggccttgatgcggccgttctcgaggccgtcacg
gccattggctacgaaaccccgtcgcccatccaggcccagtccattccgatcctgctgggc
ggcaaacacctgctgggcatcgcccagaccggtaccggcaagaccgcagccttcgcactg
ccgctgctgagccgtatcgacgcctccagcaatcacccccaaatcctggtgctgacgcca
acccgggagctggccattcaggttgccgaagcgttcaacagctacgccagccggttccgc
gatttccatgttctgccgatctacggcgggcaggatttctatccccagctcaaggccctc
aagcgtggcgcccaggtaattgttggcaccccgggtcggaccctggaccacctgcgtcgc
ggcaccctcaagcttgatcgcatcaaggcactggtgctggatgaagccgacgagatgctg
cgaatgggcttcatcgacgatgttgaagccatcctggccgccaccccggcggactgccag
cgggcgctgttctccgccaccatgccgccgcagattcgcaaggttgcacagacctacctc
agcgacgcccaggaagttaagatcgagagccagacccgcaccgtcgagcggatctcccag
ttcatgctgccggtctacgccgaacgcaagcttgatgccctcacccgcatcctggaagtg
gaaccgttcgacgccgccatcatcttcgtgcgcaccaaggccgaaaccgcgctgctggcc
gacaagctgtccgcccgcggccatgcggttgcgcccctgaacggcgatctcaaccagcgc
cagcgcgagcagacggtcgaagacctgaaacggggcaagaaagacatcgtcattgccacc
gacgtcgccgcccgcggcctggatgtcccccgcatcacccacgtcatcaactacgacgtg
ccttacgacagcgaagcgtacatccatcgggtaggccgtaccggtcgcgccggtcgcagc
ggcaaggccatcctgctggtcaccccacgggaacgcagctggttgcgcaccctggagcgc
gccaccaactcaccgatggaggcctaccagctgccgtcaccggcggatctgctgaagctg
cgggaacagcagtttgaaagccagctgctgggttttgtggaagaccccaaactggccaag
gccatggcgctgctggatgacatcgccgagcggaatgacatggacattgccatgctcgcc
gcggcactggcctgcggcatggaggcgggtcagcccggcttgctgccactggagcaaccg
gcggatctgccgattccctctgcggcaccgcgccgcaaacagggtggaggcggtcgcccc
cacgacaagcgccgtggtccgcgtccgggtcagaagcctggcttcaagaaagggccgaag
ggtcgtggtcgccccgacggctacaaaggcaagagtggcggtggtagcaacggcggtcgt
cagtccgaccgcaggcgctga
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