Marinobacter sp. CA1: J2887_17555
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Entry
J2887_17555 CDS
T10810
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
maca Marinobacter sp. CA1
Pathway
maca02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
maca00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
J2887_17555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
maca03021
]
J2887_17555
Transcription machinery [BR:
maca03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
J2887_17555
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
PhyR_sigma-like
Sigma70_ECF
HTH_11
GerE
HTH_29
HTH_24
HTH_28
HTH_38
Trp_repressor
HTH_Mga
DUF8040
Motif
Other DBs
NCBI-ProteinID:
UDL04471
LinkDB
All DBs
Position
complement(3853073..3853588)
Genome browser
AA seq
171 aa
AA seq
DB search
MSGTNIAEPTDVCRLYHTHHSWLRTWLKRRLDCSETAADLAQDTFTRVLLRDREGAVIRE
PRAYLSHIARALVINHWRRRDLEQAYLQALASMPEPEAPSPEHRQQLLDALCEIDAALDE
LPQPVRQAFLMSQLEGLKYREIAERLAVSEITIKRYVKRALVCCLMSVESD
NT seq
516 nt
NT seq
+upstream
nt +downstream
nt
ttgtcaggcacgaacatcgctgagcccacagacgtttgccgtctttaccacactcatcac
agctggctgcgtacctggctgaaacggcggctggactgctcggaaaccgccgccgatctt
gcccaggataccttcacccgggtgctgctgcgggatcgtgagggcgccgtgatccgggag
ccaagggcctatctctcgcacattgcccgtgcgctggtgatcaaccactggcggcgtcgc
gatctggagcaggcctacctgcaggcgctggcctccatgccggagccggaggcgccatca
ccggagcaccgacagcagctgctggatgccctgtgcgagattgatgccgccctcgatgaa
ctgccgcagccggtcaggcaggcgtttctgatgtcccagctcgagggcctgaagtatcgc
gagattgccgagcgtctggcggtgtcggagattaccatcaagcgttacgtcaagcgggcg
ctggtctgctgtctgatgtcggtggagtcggactga
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