Macrococcus sp. IME1552: BHM04_07205
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Entry
BHM04_07205 CDS
T05070
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
macr
Macrococcus sp. IME1552
Pathway
macr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
macr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BHM04_07205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
macr03019
]
BHM04_07205
03400 DNA repair and recombination proteins [BR:
macr03400
]
BHM04_07205
Enzymes [BR:
macr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BHM04_07205
Messenger RNA biogenesis [BR:
macr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BHM04_07205
DNA repair and recombination proteins [BR:
macr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BHM04_07205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HRDC
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
ATD30987
LinkDB
All DBs
Position
complement(1393074..1394843)
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AA seq
589 aa
AA seq
DB search
MEKVLKAYYGYETFRPGQSELIQNALDNHATLGILPTGGGKSICYQIPGILKGGLTLVIS
PLISLMKDQVDSLNASGIHAAFLNSTQKVKETKQIETGLINGDYQFLYVAPERFNQRQFI
HLLYQLNINLIAFDEAHCISKWGHDFRPSYRESIKAVMSLPHSFTLMALTATATVDVKED
ICNLLHIENQYVIETSTKRDNLKFMIDPTYQKQKRLLEFIGAHKEDSGIIYANTRKQVES
LSEVLHLEDIDHVIYHAGLNKDVKDDHQSKFVKDDVKVMIATNAFGMGIDKSNVRYVVHY
NLPQDIESYYQEAGRAGRDGLDSECLLMFGEQDIKLQQFFIETTNDETVQELKKEKLNKM
IAYTKTKQCLQSTIIHYFNPDEHLNKCGKCSNCKHEIENYNMTTEAKKILSCIIRIKQPV
HKLLITKVLHGEEDDSVTHPGYHQLTTFGLLKDYPTNAIQSFIETLLFNGYIIEQQGKLF
CHESAREILTGDKQVMTYYKHSSYNERVKITTIETVDEILLKTLKDVRKRLSDDLSVPPF
TIFSDHTLQLFATKKPVSKDEMILIEGVGSYKLKHYCPEFIDAIKTYSA
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atggagaaagtattaaaagcgtactatggttatgaaacgttcagacctggtcaaagcgaa
ttgattcaaaatgcattggataatcatgctactttaggcattttaccgacaggtggagga
aaatcaatctgttatcaaattccaggtatattaaaaggcggattaacacttgtgataagt
ccattaatttctttgatgaaagatcaggttgatagcttgaatgcgagtggtattcatgct
gcatttttaaattcaacacaaaaagtaaaggaaacaaaacagatagaaactggtttgatc
aacggagactatcagttcctttatgttgcacctgagcgatttaatcaacgtcagtttatt
catttgttgtaccaattaaatatcaatctgatagcttttgatgaagcacactgtatttca
aagtggggacatgattttagaccgagttatcgtgaatcgattaaagctgtaatgagttta
ccgcattcgtttactttaatggcactcactgcaacagcaactgtggatgtcaaagaagat
atatgtaatttattacatattgaaaaccaatacgtgattgaaacaagtacgaaacgcgat
aatttaaagtttatgatcgacccaacatatcagaagcaaaagcgactattagaatttatt
ggagcacataaagaggattcaggcattatctatgcgaatacgagaaaacaagtcgaaagt
ttaagtgaagtgttacatttagaagatattgatcatgtcatttatcatgcaggtttaaat
aaagatgtgaaagatgaccatcaatcaaagtttgttaaagatgatgttaaagtcatgatt
gctaccaatgcttttggcatgggcatcgataaatccaatgtacgctatgttgttcattac
aatctacctcaggatatcgaaagttattatcaggaagcaggacgtgcaggacgtgacggc
ctagatagtgaatgtttactcatgtttggtgagcaggatattaaattacagcagtttttt
attgaaacaactaacgatgaaactgttcaggaacttaagaaagaaaagctgaataagatg
attgcttatactaaaacgaagcaatgtttacagtcgaccatcattcattattttaatcct
gacgaacatcttaataaatgtgggaaatgttctaattgtaaacacgaaatagaaaattat
aatatgacgactgaggcaaagaaaatattaagctgtattattcgtataaagcaaccggtt
cataaattattgattactaaagtattgcatggtgaggaagatgattcagtgacgcatccg
ggatatcatcagctcactacatttggattactgaaagattatcctacaaatgcaattcag
tcttttatcgaaacgttattgttcaatggatatatcattgaacagcaaggtaaactattt
tgtcacgaaagtgccagagaaatattaaccggagataagcaagtgatgacgtattacaag
cattcatcttataatgaacgtgttaaaatcactacgattgaaacagtggatgaaatattg
ctgaaaacgttaaaggatgtacgtaaacgtttatctgatgatttatctgtaccgccattt
acgatattttcagatcatacgctgcagctatttgctacgaaaaaaccagtctcaaaagat
gaaatgattctaattgaaggtgttggatcatacaaattaaaacattactgtccagaattt
attgacgcaataaaaacatattcggcatga
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