Marinobacter adhaerens: HP15_622
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Entry
HP15_622 CDS
T01922
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mad
Marinobacter adhaerens
Pathway
mad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HP15_622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mad03019
]
HP15_622
03016 Transfer RNA biogenesis [BR:
mad03016
]
HP15_622
Enzymes [BR:
mad01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HP15_622
Messenger RNA biogenesis [BR:
mad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HP15_622
Transfer RNA biogenesis [BR:
mad03016
]
Prokaryotic type
tRNA degradation factors
HP15_622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_HELZ2
OB_Dis3
CSD
Motif
Other DBs
NCBI-ProteinID:
ADP96386
UniProt:
E4PP74
LinkDB
All DBs
Position
646163..648604
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AA seq
813 aa
AA seq
DB search
MCSELGQSSEEGIEALRRRLIAMCRDGQLICNRRGAYLPIEEADLVTGRVIGHKDGFGFL
VPDDGGSDLFLTARQMRQVFHGDRVAARVDRVDDRGRREGVIVEVLEYRTSQTVGRFFQE
SGISFVVPENARINHEVLIPQENCGNARHGQYVVVDIVRQPTVRTQPLGKVVEVLGEHMA
PGMEIDVAIRSYDIPHSWPPAVGEQTAAIPEEVTEKDKVNRKDIRNLRLVTIDDETARDF
DDAVYCEPRARGGYRLLVAIADVSHYVRPGTPLDEEAVNRSTSVYFPDHVVPMLPEKLSN
GLCSLNPGVDRLCMVADMTISAAGNISSYSFYQAVMFSHARLTYNKVSTMLEHPDTEQGY
KLCEQYANVLPQLHNLYGLYQLLRKARTERGAIDFETTETKIVFDADRKIEEIVPVQRND
AHKIIEECMLCANVATARFLKKHKLPALYRVHDGPSEERLNAVRLFLGELGLQLGGGDSP
TSADYQELLNSIKDRSDANVIQTVMLRSLSQAVYSPEEGGHFGLGYAGYAHFTSPIRRYP
DLINHRAIKSVIHGGQPSKDVVPPPKPDPELAEYPYDMARMEQLGEHTSMAERRADDATR
DVMAWLKCEYLSDHVGEEYDGVIASVVPFGFFVELSGVYIEGLVHVSTLSGDFFHHDSAK
HRLIGERTAMSFRLGDEVRVKVVRVGMEDRKIDLELISEPVHRQADRDALKVPDKGERGK
GKRGPGKGGKPPGRTKPGQKSASPGEPGLKRPRKRPASASSKKKGPEAFDDNETPSARDE
LVAKAAKLALKKGKKGSGAGKDDKKAKPRKSGK
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
ttgtgttccgagcttggtcagtcttcggaggagggtattgaagcccttcggcggcgtttg
atcgccatgtgccgggatggacaactgatctgcaatcgccgtggcgcctacctgcccatt
gaagaagcggatctggttaccggtcgcgtgatcggacacaaggatggcttcgggtttctg
gtgccggacgatggcggctccgacctgtttcttacagcccgccagatgcgacaggtgttt
cacggtgaccgggtggctgcccgggtagatcgggtggatgaccgcggtcgacgtgagggt
gtgattgtcgaggttcttgaataccggaccagccagacagtagggcgttttttccaggag
agcggtatcagcttcgtggttccggaaaatgcgcggatcaaccatgaggtgctcattccc
caggaaaattgcggcaacgcccgtcatggccagtacgtggtggtggatattgttcgtcag
cctaccgtacgcacccagccattgggcaaggttgttgaggtgctgggagagcatatggcg
ccgggaatggagattgacgttgccattcgttcctacgacattccccatagctggccaccc
gccgtgggtgagcaaacagccgcaattccggaagaagtcactgaaaaagacaaggtcaac
cggaaggatatccgcaatctcaggctggtaacgatcgacgacgagacggcacgggatttt
gatgatgccgtgtattgcgagccaagggcccgtggtggctatcgtctgctggtcgcgatt
gccgatgtttcccactacgtccgtccaggtacaccattggacgaagaggcggtaaaccgc
agtacgtcggtttatttcccggatcacgttgtgccaatgctgccggaaaagctgtccaac
ggcctgtgttcgctgaacccgggggtcgaccgcctctgcatggtggccgatatgaccatc
agcgccgctggcaatatcagcagctacagtttttatcaagcggtcatgttcagtcatgct
cggcttacctataacaaggtaagcaccatgctggagcacccggacaccgaacagggctac
aagctgtgtgagcaatacgccaacgtgctcccgcagttgcacaatctttatggcctctac
cagttgttgcgcaaggcccgtaccgagcgtggtgcaattgacttcgaaaccaccgaaacc
aagattgtgtttgacgccgaccggaagatagaagagatcgttccggtgcagcgcaacgac
gcccacaagatcatcgaggagtgcatgctgtgtgcgaacgttgccacagcgcgattcctg
aaaaaacacaaactgccggcactctaccgggtccatgatggcccgtcagaagagcgactt
aatgcagtgcggctgttcctgggtgagctgggtctgcaattggggggtggcgatagcccc
acgtctgcggactatcaggagctgctgaacagtatcaaggatcgctcggatgccaatgtg
atccaaacggtaatgctgcgttcgctcagccaggccgtctacagtccggaagagggtggc
cattttggccttggctatgcaggctatgcccactttacgtcgccgatccggcgttatccg
gacctcattaatcaccgggccatcaagtcggttattcacggcgggcagccttccaaggat
gtagttccgccaccgaagccggatcccgagcttgccgaatatccttacgatatggcccgg
atggagcagctgggtgagcatacctcgatggcagagcgccgtgccgatgatgccacccgt
gacgtcatggcctggctgaagtgtgagtacctcagtgatcatgtcggtgaggagtacgac
ggtgtcattgcgtccgttgtgcccttcggtttctttgtggagctttctggcgtctacata
gaggggctggtgcacgtgtcgacgctcagcggtgacttcttccatcacgattcagccaag
catcgcctcatcggtgagcgcacggcaatgagcttccggcttggtgatgaggttcgtgtg
aaggtcgttcgggttgggatggaagatcgcaagatcgacctggagctgatcagtgagccc
gtgcatcgacaggcagatcgtgacgcgctcaaggttccagataaaggcgagcgaggaaag
ggcaagcgcggccccggcaaaggtggcaagccgcccggcagaaccaagcctggccagaag
agtgcgtcacccggcgagcctggcctgaagcgcccgaggaaacgcccggcgtcggcgtca
tcgaagaaaaaggggcctgaggccttcgatgataatgaaacgccatctgccagagatgag
ctggttgcaaaggctgcgaaacttgccctgaaaaaaggcaagaagggcagtggcgctggc
aaagacgacaagaaagccaagccgcgaaaatcaggcaagtaa
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