Mycobacterium adipatum: A7U43_10130
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Entry
A7U43_10130 CDS
T09402
Name
(GenBank) cold-shock protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
madi
Mycobacterium adipatum
Pathway
madi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
madi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A7U43_10130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
madi03019
]
A7U43_10130
03009 Ribosome biogenesis [BR:
madi03009
]
A7U43_10130
Enzymes [BR:
madi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A7U43_10130
Messenger RNA biogenesis [BR:
madi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A7U43_10130
Ribosome biogenesis [BR:
madi03009
]
Prokaryotic type
rRNA helicases
A7U43_10130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
CMS1
HEM4
adh_short
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ANE79633
UniProt:
A0A172UKL0
LinkDB
All DBs
Position
2120201..2121883
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AA seq
560 aa
AA seq
DB search
MTSPDEATPAAELTFADLQIHPSVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTG
TGKTAAFAIPILSKIDAASKNTQALVLAPTRELALQVAEAFGRYGAHLPGIQVLPIYGGS
SYGPQLAGLRRGAQIVVGTPGRVIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERI
LADTPEYKQVALFSATMPPAIKKITSKYLHDPVEVTVKSKTQTAENITQRYLQVSYPRKM
DALTRLLEVEEGDAMIVFVRTKQATEEVAEKLRARGFAAAAINGDIPQTQRERTIASLKS
GAIDILVATDVAARGLDVERISHVVNYDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRE
RHLLGSIERVTRQKLVEMQLPSVDDVNAQRVAKFNDSISESLNSPGIDLFRRLIEDYERE
HDVPLADIAAALALLSRDGEAFLMTEPPPEKRKERTERAPREDGPGRKKHSTRTDLATYR
IAVGKRHKVAPGAIVGAIANEGGLNRSDFGHINIKVDHSLVELPAKLPREVYKKLENTRI
QGLLINLQPERSSKPRRKDS
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcgcctgatgaagccacccccgccgccgaactgacctttgctgacctgcagatt
cacccatcggtgctgcaggccgtcaccgacgtcggctacgagtcgccgtcggcgatccag
gccgccaccatcccgcccatgctggccggctccgacgttgtcggcctggcccagaccgga
acgggtaagaccgcggccttcgccatcccgatcctgtccaagatcgatgccgccagcaag
aacacccaggccctggtcctggcgccgacccgcgaactcgcgctgcaggtggccgaggcc
ttcggccgttacggcgcgcacctgccgggcattcaggtgctgcccatctacggcggctcg
tcctacggcccgcagctggcgggattgcggcgcggggcgcagatcgtggtgggcaccccc
ggtcgcgtcatcgaccatctggagaagggcagcctggacctctcgcacctggactacctg
gtgctcgacgaggccgacgagatgctgcagatgggcttcgccgaggacgtcgagcgcatc
ctggccgacacacccgagtacaagcaggtcgccttgttctccgcgaccatgccgccggcc
atcaagaagatcaccagcaagtacctgcatgatccggtcgaggtcaccgtcaagtccaag
acgcagaccgccgagaacatcactcagcgctacctgcaggtgtcctacccgcgcaagatg
gatgcgctgacccggctgctggaggtcgaggagggcgacgcgatgatcgtgttcgtccgc
accaaacaggccaccgaggaggtcgccgagaagttgcgcgcgcggggattcgccgcggcc
gccatcaacggcgacatcccgcagactcagcgcgagcgcaccatcgcgtcgctcaagagc
ggtgccatcgacatcctggtggccaccgacgtggccgcccgcgggctggacgtggaacgc
atttcgcacgtggtgaactacgacatcccgcatgacccggagtcctacgtgcaccgcatc
gggcgtaccggccgcgccggacgctcgggcaccgccctgctgttcgtgaccccgcgggaa
cgccatctgctcggttcgatcgagcgcgtcacccgccagaagctggtcgagatgcagctg
ccgtcggtggacgatgtcaacgcgcagcgcgtggcgaagttcaacgactcgatcagcgaa
tcgctgaactccccggggatcgatctgttccggcgcctcatcgaggactacgagcgcgaa
cacgacgtgccgttggccgatatcgcggccgcgctggcgctgctgtcccgcgacggggaa
gcattcctgatgaccgagccgccaccggagaagcgcaaggagcgcaccgagcgggcgccg
cgcgaggatggtccgggccgtaagaagcacagcacccgcaccgatctggcgacgtaccgg
atcgcggtgggcaaacggcacaaggtggcacccggagcgatcgtcggcgccatcgccaac
gagggcggcctgaaccgtagcgacttcggacacatcaacatcaaggtcgatcactcgctg
gtggagttgcccgccaagttgccgcgggaggtctacaagaagctggagaacacccgcatc
cagggtctgctgatcaatctgcaaccggaacggagcagcaagccccgtcgcaaggactcg
tga
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