Mycobacterium adipatum: A7U43_21825
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Entry
A7U43_21825 CDS
T09402
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
madi
Mycobacterium adipatum
Pathway
madi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
madi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A7U43_21825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
madi03019
]
A7U43_21825
03400 DNA repair and recombination proteins [BR:
madi03400
]
A7U43_21825
Enzymes [BR:
madi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A7U43_21825
Messenger RNA biogenesis [BR:
madi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A7U43_21825
DNA repair and recombination proteins [BR:
madi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A7U43_21825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C_2
Helicase_C
RNase_T
ResIII
RecQ_Zn_bind
HTH_20
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
ANE81575
UniProt:
A0A172URA2
LinkDB
All DBs
Position
4597329..4602569
Genome browser
AA seq
1746 aa
AA seq
DB search
MTTSTRPMPPAAEAAHQALSEFGPLAASELREKLRPRGFVQPIERLQQLADRFPHRFQVN
PDGLLAVATTSATSRDDDPDRAPGDDVDWYRPHPDRIPLDRVAVLDLETTGLNRATDFIT
EIAVVRLDGTPLLDVAIELPPGIDRPAPARSEPVPLGEALRRFETDIADIGLLIGHNIVN
FDQKFLIAAANRAGLHPPRLPPIIDTLHLSLLVDVALPNRGLADLTQMLNVDHSARHQAL
SDATATAAVSRKLIASVDATEPSWALAIAALETHSHPLALIMPPLSSVPELTTLTRDADA
LLTPTGSASPDAWSATRNAFPVLHRQRGLRSRPAQQEMAHAVAQVFDNGGRVAVEAPTGT
GKSLAYLLPAIGRASRPRQPVLLATATKALQSQLRDEAARLQQENLLAAPFRQIQGVGNY
VCARELEDALPDVDASGLALAVAVRALATSPTGTWDDVTDDVVRRADTRYARTRARIKTS
SGGCDRTSCKWASLCPLMRQIQGLDSSPGIVSVNHALIASWIKLAQSGIPAPGDVLGEGR
ADLVLDEAHALEDSLTAAWTEGIDALELEILVNSLSRRSRLVREIQKRAPGRTDVVDALQ
AIAATLPQIRPAGTELSEAIATYLHEYAGRADAVVLRSGVVDGRPEFRILRQAARQVRYQ
LIQLAKAVSSLRSSLSDVAGTGSARQRLRGYAERLDNAINLLETLGPLPDSHLWVYRLAA
EEDDPAAWTYERLPIHIFPEFKQWVVDRTHSTVLCSATLTVEHRFDYTASRLGVRIDPEP
GDDDFRALRLASPFDYQNQSVVVLTNHLPVPIPVNEREFCEEMAADQAGFLSLAGGRTLT
LFAARKRMDAVADGVRTKTAELAQRGVELLVQGELGRSQIAHRFRNEQGTVLYGLKSYWE
GFDAPGETLSYLFIEKPPYPHPDDPLVSARQRAIAERGGDPFLDYVLPMTAMQFTQGFGR
LIRSETDKGAALICDRRLHAPTQAQRVMLGSLPGPAIHESQDRDDAWTRAIEFVTGEAPD
LSTAISFGRDDVTQLLESLRLIEGEDPTAKLIEAAEKLFGIAELHPKQLEVMQAIIDGRD
VVAILPTGFGKSVCFQLPALLAPQARATVVVSPLVALIKDQVNDLRGRRGIRPVQGITGT
TSRVVQTEILRDTAKGDVRLLYVSPERLARDPVLRGALGRQQLNRVIVDEAHCISVWGHD
FRPEFRQVPASVASFDTRPPRAGLTATATPDVEVDITGALDMVEPVSVREPSDRQNLRFR
VVHCADERDRARELLRFVTWCAGVPGIVYVSKRALAEEIAALLRRAGYSARPYHAGMVPE
QRDAVQEDFDSDTTQIIVATKAFGMGINKPNIGWVLHYDLTDSLDGYAQEAGRAARSRDL
TGNCVLLYTNSDLARRRRLIEANSTKADAAITQRLLALLWTCTERRDSRVFDIDEVADQL
GIDDDEVNVHLAQLERVGALEQELDCSARGTVDVGFREPEDERERTLFRELFYRAHRARP
NVRIQIDFQQLKDAHGYDPDDLERQLIDWSLDRLVTFSSSRRLRRVRLLKRVAPEDVLAR
ESARWKWWQKRRLQAMIDYATNESDCRRIIVGRHFGDEIADCGSRDIVTCDICEGTPAPW
ASTPDHLVPDPELLVNAELTALQAIAWSSSYRRGAYGEASLKAAVLGRESLGEGRPLGAG
VLSCPQFGALRHVRNGERRWDETVHNLLDKGLIERRAVEREATRTAYQSLALTALGAQTL
GVPGAQ
NT seq
5241 nt
NT seq
+upstream
nt +downstream
nt
atgaccacctcgactcgaccgatgcctccggcagccgaggctgcccatcaggcgctttct
gagttcgggccactggctgcgtccgagcttcgcgagaaacttcggccgcgcggctttgtc
cagccgatcgagcgcctgcagcaactcgccgacaggtttcctcatcgctttcaagtgaac
cccgacgggcttctcgccgtcgcgaccacgtctgccacctccagagacgacgatcccgac
cgtgccccaggagacgacgtcgactggtaccgcccgcaccctgatcgcatcccgctcgac
cgggtcgccgtgctcgacctggagaccaccggactcaaccgagccaccgatttcatcacg
gagatcgcagtcgtccgactcgacggcacacccctgctggacgtagcaatcgaacttcca
ccgggaatcgatcgtcccgctccagcgcgatcagaaccagtaccccttggcgaggcgctt
cgccggttcgagactgacattgcggacatcggcctcctcatcggccacaacatcgtgaac
tttgatcagaagttcctcatcgctgcggccaaccgcgcaggcctgcaccctccacggctg
ccaccgatcatcgacaccctgcacttgtccctccttgtcgacgtcgccctgcctaaccgg
ggccttgccgatctgactcagatgctgaatgtcgaccactccgcacgccatcaggctctt
tccgacgcgactgcgaccgccgccgtatccagaaaactgatcgcttcggtcgacgcgaca
gaacccagttgggcactcgccattgccgcgctcgagacacactcgcacccgctggctttg
atcatgccgccgctgagctccgtccccgagctcacaacattgactcgagatgccgacgcg
ctgctgacgccaacagggtcggcgtcccccgatgcgtggtccgccacccggaacgcattt
cccgtactgcaccggcagcggggccttcgatcgcgtcccgcacagcaagaaatggcacat
gccgtcgcgcaggtcttcgacaacggcggccgggttgccgtcgaggccccgaccggaact
ggaaagtcgctggcctacctgctcccggcgatcggtcgcgcgtcgcgcccccgacaaccc
gtgttgttggcaaccgccacgaaggctctgcaaagccagctacgtgacgaagctgcgcga
ctgcaacaagagaatctgctcgccgcaccgttccgccagattcagggcgtcggcaactac
gtctgcgcgcgcgagctcgaagatgccctgccagatgtcgacgcctccggtctcgcgctg
gcagtcgctgtccgtgcactcgccacatctcccaccggcacgtgggacgacgtgaccgac
gacgtggttcggcgcgccgacacccgatacgcacgcacccgcgcacgtatcaagacaagt
tcaggcgggtgtgatcgcacgtcgtgcaagtgggcctcgttgtgccctctgatgcgtcaa
attcaggggctcgatagctcccccggcatcgtgtccgtcaatcacgcgcttatcgccagt
tggataaagcttgcgcaaagcggcatccccgcacccggagacgtgctgggcgaaggccgc
gccgacctcgttctcgacgaagcccatgcgcttgaagactcacttactgctgcatggacc
gaagggatcgacgcgctcgaacttgagatcctcgtcaacagtctgtcgcggcgatcgcgg
ttggtccgcgagattcaaaagcgcgcacctgggcgcaccgacgtagtggacgccttgcaa
gcaatcgctgccacgctgccgcagattcgcccagccggcaccgaactctccgaagccatc
gcgacgtatctgcatgagtatgccggccgggcggacgctgtcgtcctgcgttctggcgta
gtcgacggtcgcccggagttcaggatcctccgccaagcggcccgccaagtccgataccag
ctgatccaattggcgaaagccgtttcgtcgctgcgcagctcactgagtgacgtcgcggga
actggatccgcccgacaacgtctccgcgggtatgccgaacgtctcgacaatgccatcaat
ctcctcgagacactcggaccgctaccagacagccacctgtgggtgtaccgactggccgcc
gaggaggacgatcccgccgcgtggacttatgagcggctcccgatccatattttcccggag
ttcaagcagtgggttgtcgatcgaacacattcgacggtgctctgctcggcaacgttgacg
gttgagcaccgcttcgactacaccgcctcccgacttggcgtccgtattgatcccgaacca
ggcgacgacgatttccgagcccttcgcttggcatcgccgttcgattaccagaaccaatcg
gtggtagtgctcaccaaccaccttccggtgccgatcccggtcaacgagcgggagttctgt
gaagagatggcggcagaccaggccggatttctgtcactggccgggggtcggacgctcacc
ctcttcgctgcccgaaagcgcatggatgcagtggcagacggagtccgcacaaaaaccgcg
gaacttgcgcagcgcggcgttgagctgctcgtccaaggcgagctcggccgatcacagatc
gcacaccgatttcggaacgaacagggaaccgttctgtacggactcaagtcgtactgggaa
gggttcgacgcacccggagagaccctgtcctacctattcatcgagaagccaccctacccg
catcccgacgatccactcgtgtccgcacggcaacgagcgatcgctgaacgcggcggagat
ccgttcctcgactacgtactccccatgactgccatgcagttcacccagggcttcgggcgc
ctcattcggtccgagacggacaagggcgcggcactgatttgtgatcgccgactgcacgcg
ccgactcaagcacaacgggtcatgctgggctcgcttccggggccagcgatacacgaatcc
caggaccgtgacgacgcgtggactcgcgctatcgaattcgtcactggagaagctcccgat
ctgtcgaccgcgatctcattcgggcgcgacgacgtcacacaactgctcgagtcgcttcgc
ctcatcgagggggaggatccgaccgccaaactcatcgaagcagccgagaagctgttcggc
attgccgaactgcatccaaagcaactcgaagtgatgcaagcgatcatcgacggcagagat
gttgtcgccattcttccgacaggattcggaaagtcggtgtgcttccagctgccggcgctc
ctcgcgcctcaggcccgcgcgacggtggtggtgtctccgctggtggcactcatcaaagat
caggtcaacgatcttcgcggccgccgaggcatccgtccggttcaaggaatcaccggtacg
acctctcgggttgtgcaaactgagatcctgcgcgacaccgccaaaggtgacgtgcgcttg
ctctacgtctctcccgagcgtctagcgcgcgacccagtgctacgcggggcgctcggacgc
caacagctgaaccgtgtcattgttgatgaagcgcactgcatttcagtatggggccacgat
ttccgtccggagtttcggcaggtcccggcatcggtcgcctcgttcgacacgcgaccgccc
cgcgccggcctaaccgcgacagcaacacctgacgtcgaggttgatattaccggcgcgttg
gacatggtcgaacccgtgagtgttcgcgagcccagcgaccgccagaatctcagatttcgc
gtcgtgcattgcgccgatgaacgtgaccgcgcgcgggagttgctccggttcgtcacgtgg
tgcgccggcgttcccggcatcgtctacgtctccaaacgcgctcttgcagaggaaattgcg
gcgttgctccgacgagccggatactccgcccggccgtatcacgccggtatggtgcccgaa
cagcgggatgctgtgcaagaggacttcgattccgacaccacgcaaatcatcgtggcgact
aaggctttcggcatgggcatcaacaagccgaacatcggctgggtgctgcattacgacctc
acagattcactggacggctacgcacaggaagccggccgcgcagcacgatcccgcgacctc
acaggcaattgtgttctcctttacactaactcggatcttgcccggcgccgccggctcatc
gaagcgaacagcacgaaggcggatgcagcgatcactcaacggctgctggctcttctgtgg
acatgtaccgagcgacgcgacagccgtgtgttcgacatcgatgaggtcgccgaccagctt
ggcatcgatgatgacgaagtcaatgtgcacttggcccagcttgaacgtgtcggagcgcta
gagcaagaactggattgctcagcgcgcggcaccgttgatgtcggttttcgcgaacccgaa
gatgagcgtgagcgcacgctgttccgagagctcttctaccgggcccatcgggcgcggccg
aatgtccggattcagatcgacttccaacagctaaaggacgcgcacggctacgaccccgac
gaccttgaacgacaactcatcgattggtccctcgaccgcttggtgaccttttcgagttca
cgccgacttcgccgcgtgcgtctgctcaagcgcgtcgccccggaagatgtgctggcgcgt
gagtctgcccgctggaagtggtggcagaagcgtcgccttcaggcgatgatcgactacgcc
acaaatgaatcggactgccgtcggatcatcgttggccgacacttcggtgacgagatcgcc
gactgtggaagccgcgatatcgtcacatgcgacatctgcgaaggcacgccggcgccgtgg
gcatcgactccagatcacctggttcccgatcctgaactcctcgtcaacgccgaactcact
gccctacaggcgatcgcgtggtcgtcgtcgtaccgccgcggcgcctacggcgaggccagt
ttgaaagcggccgtgctgggccgagaatccctcggtgagggccggccactgggcgccggc
gttctcagttgcccgcagttcggcgcgctgcggcacgtccgcaatggcgaacgccgttgg
gacgaaaccgtgcacaacctgcttgacaagggcctgatcgagcgacgtgccgtcgaacga
gaagcgacacgcacggcgtaccagagtttggcactcaccgcccttggggcacaaacactc
ggcgtaccgggagcacaatga
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