Mycobacterium adipatum: A7U43_24010
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Entry
A7U43_24010 CDS
T09402
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
madi
Mycobacterium adipatum
Pathway
madi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
madi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A7U43_24010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
madi03400
]
A7U43_24010
Enzymes [BR:
madi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A7U43_24010
DNA repair and recombination proteins [BR:
madi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A7U43_24010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
Cas3-like_C_2
ResIII
AAA_22
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
ANE83223
UniProt:
A0A172UW09
LinkDB
All DBs
Position
complement(5055406..5059023)
Genome browser
AA seq
1205 aa
AA seq
DB search
MTAPGHTHVQNSIAGLVDLALSSPTFTDLVDRAQGRPDTLAMVGPASARLFAAAALARTG
PLLVVTATGREADDLTAELQAVFGEAVALFPSWETLPHERLSPGVETVGARMMLLRRLAH
PEDEHLGPPLRVVVTTTRSLLQPMVVDLGEIEPVTLTVGADSDFDVTIARLVELAYTRVD
MVAKRGEFAVRGGILDIFPPTAEHPVRVEFWGDEVSEMRMFSVADQRSITEIEIDHLVAV
PCREILLSDAVRERAGQLVDAGPQTDNTVAGGVGDMLAKLAEGIPVDGMEALLPVLQPDA
LTLLTTHLPEGTPVLVCDPEKVRSRAADLIRTGREFLEASWSVAAIGGAAPVDIESLGGS
GFRELDEVRAAAGHWWTLSQLNDESAIELDVRPAPSARSQNGLEEIFAMLRAHVATGGFA
VVVTPGTGTALRVVEQLTEADTPATLLDPGAAPAAGSVGVLKGPLHDGVVIPGANLVIIT
ETDLTGNRVAATDGKRLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTERVIGGARRE
YLVLEYASAKRGGGTDKLYVPMDSLDQLSRYVGGQAPTLSRLGGSDWTNTKTKARKAVRE
IAGELVALYAKRQAAPGHAFGPDTPWQAEMEDAFGFTETMDQLTAITEVKADMEKPVPMD
RVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTARTAGFPVTVKGL
SRFTDPADSKATLDGMADGSVDIVIGTHRLLQTAVRWKDLGLVIVDEEQRFGVEHKEHIK
SLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERFPVLTYVGPHDDKQVAAALR
RELLRDGQAFYIHNRVRSIDQAAARVQAMVPEARVVVAHGQMNEETLEKTVEGFWNRDYD
ILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPEVPLT
ETAHDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRLVGEAV
EAYRAAVDGKTVSAVEEPKDVRIDLPVDAHFPPEYIGSDRLRLEAYRRLAAAADGAAVDR
VIEELNDRYGPLPEPAQRLIAVARLRLLCREYGVTEVATVSDATLKVAPLTLLDSGQMRL
KRVYPGSAYRATTSTVQVPIPRAGSGVGAPRIRDLELLQAVAGLLLALDGRPAGDVDITA
MGGAQ
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccggggcacactcatgtccagaattcgatcgcgggcctcgtcgacctggca
ctgagctcgcccaccttcaccgatctggtcgaccgcgcgcagggccgtcccgacacgttg
gcgatggtgggcccggccagtgcccgactgttcgccgccgccgcgctggcccgcaccggg
ccgctgctcgtggtgaccgccaccggccgcgaggccgacgacctgaccgccgaactgcag
gccgtcttcggcgaggccgtcgcgctgttcccgtcctgggagacgctgccccatgagcgg
ctctcgcccggcgtggagaccgtcggcgcccggatgatgctgctgcgccggctcgcgcat
cccgaggacgagcatctgggcccgccgttgcgcgtcgtggtcaccaccacccggtcgctg
ctgcagccgatggtggtcgacctcggtgagatcgagccggtgacgctcacggtcggcgcc
gactccgatttcgacgtcaccatcgcccggctggtcgagctggcctacacccgggtggac
atggtggccaagcgcggcgagttcgcggtgcgcggcggcatcctcgacatcttcccgccg
accgccgaacatccggtgcgggtggagttctggggggacgaggtctccgagatgcggatg
ttctccgtcgccgatcagcggtccatcaccgagatcgagatcgaccatctggtggccgtc
ccgtgccgggagatcctgctcagcgacgccgtcagggaacgcgccgggcaactcgtcgat
gccggcccgcagaccgacaacaccgtggccggcggggtcggcgacatgctggccaagctc
gccgagggcatcccggtcgacgggatggaggcgttgctaccggtgctacaacccgatgcg
ctgaccctgctcaccactcacctgcccgagggcaccccggtgctggtctgcgatccggag
aaggtgcggtcgcgcgcggccgacctgattcgcaccggccgggaattcctggaggcgtcc
tggtcggtggccgccatcggcggggcggccccggtcgacatcgaatccctgggtgggtcc
ggcttccgggagctcgacgaggtgcgggcggcggccgggcactggtggacgctcagccag
ctcaacgacgagtcggcgatcgagctcgatgtgcgcccggcgccgtcggcgcgcagccag
aatgggctcgaggagatcttcgcgatgctgcgggcccacgtcgcgaccggcgggttcgcc
gtcgtggtcaccccgggcaccggcaccgcgctgcgcgtcgtcgagcagctgaccgaggcc
gacactcccgcaacacttctggacccgggcgccgcgcccgcagcggggtcggtgggcgtg
ctgaagggcccgctgcacgacggtgtcgtcatccccggcgccaatctggtgatcatcacc
gagaccgatctcaccggtaaccgagtggccgccaccgacggcaaacgccttgccgccaaa
cgccgtaacgtcgtcgatccgctggcgctgaccgcgggtgacctggtggtgcacgatcag
cacggcatcggcaaattcgtcgagatgaccgaacgggtgatcggcggcgcacgccgcgaa
tacctggtactggaatacgcatcggccaaacgcggtggtggcaccgacaagctctacgtc
ccgatggactcccttgaccagctgtcccgctatgtcgggggccaggcgcccaccctgagc
cgtctcggcggcagtgactggaccaacacgaaaaccaaggcgcgcaaggcggtccgggag
atcgccggtgaattggtcgcgctgtacgccaaacgtcaggcggcccccggtcatgcgttc
ggcccggacaccccgtggcaggccgagatggaggacgccttcggcttcaccgagaccatg
gatcagttgaccgcgatcaccgaggtcaaggccgatatggaaaagccggtcccgatggac
cgggtgatctgcggtgacgtcggctacggcaagaccgagatcgcggtgcgggcggcgttc
aaggcggtgcaggacggtaaacaggtggcggtgctggtgccgacgacgctgctggccgat
cagcatctgcagacgttcaccgcccgcacggcgggtttcccggtcaccgtgaagggcctg
tcccggttcaccgatccggccgattcgaaggcgaccctcgacggaatggccgacgggtcc
gtcgatatcgtgatcggcacccaccggctgctgcagaccgcggtgcgctggaaggacctc
ggcctggtgatcgtcgacgaggaacagcgcttcggtgtcgagcacaaggaacacatcaag
agcctgcgcacccatgtcgacgtgctgaccatgagcgccaccccgatcccgcgcaccctg
gagatgagcctggccggcatccgcgagatgtccaccattctcaccccgcccgaggaacgc
ttcccggtgctcacctacgtcggcccgcacgatgacaagcaggtggccgcggcgctgcgc
cgtgaactgctgcgcgacgggcaggcgttctacatccacaaccgggtccgctcgatcgat
caggccgcggcgcgggtgcaggcgatggtgcccgaggcgcgcgtggtggtggcgcacggt
cagatgaacgaggagaccctggagaagaccgtcgagggcttctggaaccgcgactacgac
atcctggtctgcaccaccatcgtcgagaccggcctggacatctcgaacgccaacacgctg
atcgtggaacgcgccgacaccttcggcctgtcccagctgcaccagttgcggggccgggtc
gggcgcagtcgcgagcgcgggtacgcgtacttcctgtatccgccggaggtgccgctgacc
gagaccgcgcacgaccggctggccaccatcgcgcagaacaatgagctcggcgccggcatg
gcggttgccatgaaggacttggagattcgcggtgccggcaacgtgctgggtgccgaacag
tccggtcacgtcgccggtgtcgggttcgatctctacgtgcggctggtgggtgaggccgtc
gaggcgtaccgggccgccgtcgacgggaagaccgtcagcgccgtcgaggaacccaaggat
gtgcgcatcgatctaccggtggacgcgcacttcccgcccgagtacatcggtagcgaccgg
ctgcggctggaggcctaccgcaggctggccgcggccgccgacggtgccgcggtggaccgg
gtcatcgaggagctcaacgaccggtacggcccgctgcccgagccggcgcaacggctgatc
gcggtggcccggctgcggctgctgtgccgcgagtacggggtgaccgaggtggccaccgtg
tccgacgccaccctgaaggtcgccccgctgactctgctggattccgggcagatgcggctc
aagcgggtctatcccggttcggcgtaccgggccacgacgtccacggtgcaggtcccgatc
ccgcgggccggttccggggtgggcgcgccgcgcatccgcgatctggaactgctgcaggcg
gttgcgggtctgctgctggcgctggacggccggccggcgggcgatgtggacatcaccgcg
atgggcggcgcgcaatga
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integrated database retrieval system
