Mya arenaria (softshell): 128202676
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Entry
128202676 CDS
T09995
Name
(RefSeq) general transcription factor IIH subunit 2-like isoform X1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
maea
Mya arenaria (softshell)
Pathway
maea03022
Basal transcription factors
maea03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
128202676
09124 Replication and repair
03420 Nucleotide excision repair
128202676
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
maea03021
]
128202676
03400 DNA repair and recombination proteins [BR:
maea03400
]
128202676
Transcription machinery [BR:
maea03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
128202676
DNA repair and recombination proteins [BR:
maea03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
128202676
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Zn_ribbon_GTF2H2
Castor1_N
Motif
Other DBs
NCBI-GeneID:
128202676
NCBI-ProteinID:
XP_052759683
LinkDB
All DBs
Position
9:62579381..62606232
Genome browser
AA seq
398 aa
AA seq
DB search
MTEEDDQGYRWETEYEKTWEVLQEDAEGSLQASIDELVHKAKRRKQLEKITNVRLGMMRH
MFIIIDMSSAMDDQDLKPSRLVCSLKLLEHFIEEYFDQNPISQLGIIVTKNKRAEKITEL
GGNPRRHINAVQKLKERACQGEPSLQNSLELAMQTLRHMPGHASREVVCIFGSLTTCDPG
DILETIKLVGESNIRCSMVGLSAEVRVCRKLCSDTNGRYTVILDESHFKDLLNQHTSPPP
AMMNTESSLIRMGFPHQQLGSDKDKPAMCMCHLDSKTVEGFSTTGYFCPQCKSKYCELPI
ECKACGLTLVSAPHLARSYHHLFPLDQSKEVPVTDFDPGFNIYCYACQGQILEQSVYRCV
KCKNLFCIDCDIFIHDTLHSCPGCASSRNTQTAEAVFT
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgacggaagaagatgaccaaggatatcgctgggagactgaatatgaaaagacctgggaa
gtgctgcaagaagatgcagagggctcccttcaggctagcattgatgagctcgttcacaag
gcgaagcggagaaaacagttggagaagatcaccaatgtccgactgggaatgatgcgtcac
atgtttattatcatcgacatgtcttcagctatggatgatcaagaccttaagccatcaaga
ctagtctgctccttaaagttattggagcattttatagaggagtatttcgaccagaaccct
atcagtcaactggggataattgtaaccaagaacaagagggcggagaaaatcaccgagtta
ggaggtaacccccggcgccacatcaatgctgttcagaagttaaaagagcgggcttgtcag
ggagaaccttcactccagaattcccttgaactcgccatgcagactctaagacatatgcct
ggccatgctagccgagaggttgtgtgtatatttggtagcctgaccacgtgtgatccagga
gacatactggaaaccatcaagttggtgggagaaagcaatatccgttgttctatggttgga
ttatctgccgaagtccgggtctgcaggaagttgtgttcagacacaaatggtcgttacact
gtgatattggatgagagccactttaaagatcttttaaatcagcacaccagtccaccccct
gccatgatgaacaccgagtcttccctgatccgaatgggcttcccccatcagcagctaggt
agtgataaggacaagcctgccatgtgtatgtgtcacctggacagtaagactgtggagggg
ttcagcacgactggctacttctgtcctcaatgtaagagcaagtactgcgagcttcccatc
gagtgcaaggcctgtggtttgacgctcgtgtcggcccctcatctagcaagatcctaccac
cacctgttcccacttgatcaatcaaaggaggtcccggtcacagattttgacccgggcttc
aatatatactgttatgcttgtcaaggccagattttggaacagtctgtgtatcgatgtgtg
aaatgtaagaacctgttctgtatcgactgtgacatcttcatccacgacaccctccattcc
tgtcctggctgtgcaagctcccgaaacactcagactgcagaagctgtctttacttga
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