Mya arenaria (softshell): 128202680
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Entry
128202680 CDS
T09995
Name
(RefSeq) 5'-3' exoribonuclease 1-like isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
maea
Mya arenaria (softshell)
Pathway
maea03008
Ribosome biogenesis in eukaryotes
maea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
128202680
09123 Folding, sorting and degradation
03018 RNA degradation
128202680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maea03019
]
128202680
03009 Ribosome biogenesis [BR:
maea03009
]
128202680
03016 Transfer RNA biogenesis [BR:
maea03016
]
128202680
03036 Chromosome and associated proteins [BR:
maea03036
]
128202680
Messenger RNA biogenesis [BR:
maea03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
128202680
mRNA degradation factors
5'-3' decay
5' exonucleases
128202680
Ribosome biogenesis [BR:
maea03009
]
Eukaryotic type
Pre-60S particles
RNases
128202680
Transfer RNA biogenesis [BR:
maea03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
128202680
Chromosome and associated proteins [BR:
maea03036
]
Eukaryotic type
Gene silencing
piRNA pathway
128202680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
XRN1_D1
XRN1_D2_D3
SH3_12
Motif
Other DBs
NCBI-GeneID:
128202680
NCBI-ProteinID:
XP_052759685
LinkDB
All DBs
Position
9:4690583..4764347
Genome browser
AA seq
1542 aa
AA seq
DB search
MGVLKFYQWISERYPCLSEVVREFQLPEFDNLYLDMNGIIHVCSHPEDNNPHFRITKEKI
FAAITYYLEFLFRMIKPQKVCFIAVDGVAPKAKMNHQRGNSFRKAREAEELEKRAREKGE
VLPTEKRFNPSCIKPGTEFMVQLQEQLKYFVVKKVSQDPLWKGVRVYLSGHETPGEGEHK
IMDFIRTERADPNYDPNTRHCLYGLDADLIMLGLATHEPHFSLLREEVRFEGKSKQRSSK
RPQTPEETTFQLLHLSLFREYLDIEFSDLKGRLKEFEYNLENVIDDWVLMGFLVGNDFIP
HLPNLHINQDALPLLWKTYIEVLPECGGYINNGGKLNLERFEKYLTALSKFDFETLSEQA
GDIKRFQGKKAGASAEQSEVLSAARKLGKNQQKSVERLHAGNQFALNTLNREEVKDEELG
NELIPRLDDYSEDQDTEDYSEEDILDDEFRRHKRHYYMTKLEYKNVTPEVLRDQAEGYVR
GIQWILLYYYQGVQSWSWFYPHHYAPYMSDVKDFVNMDLTFDIGTPFNPFEQLMAVLPVA
SKELLPVPYQNLMTNATSPVIEFYPLDFETDLNGKQKDWEAVVLITFIDERRLLEAIRSV
CDLLTPDEKARNSHGPHLLYEYVEEPGEPYPSILPEAFPDIAINHARLTKVHQDDHHIDP
ARLKMGILPGARLDVFFPGFPTLRHIPHRAELSKEGVKVFQANSRGFNTMLHIKASESVP
SIDQIAQEYLGREIYVSWPHLYEAKVVAVCDDKYSFSQVNDGAKGSKPKIHSDTSDDNMT
NIWYKEKDTIAERYHDRLGVVIGQTHILLRALPMTGRKYILGSHGRTTMEKQFGVHPVAF
ALQATVKDIAVHEPGFCQFTTLSEYMPEKAEVFMLGWPHYGCQGEVLDTDMQSGHVRINL
SILEEPSLAHIVNNMKDFDIQYVSAFVGAQKLGISSNLLSRLTGTIFVTVGCEEVAKEQM
NPYRINVGLNLKFTTRQEEVPGYTRLQDGKWAYSFKCVDTLRDYMKKFPDMFDIISKSDR
KQNDFYENEVIPESSGYKLKNVQEYVKGLECTNVKTQKAGADIMAEGVIKALLEETDKTV
EVNKKRQKRVKMQVKPHLLYRPIVTSGSLIPDSSTEYQLFDRVVNTRQGFSVPFGLRGTI
VGIYPAEVEVNTVYGVIFDEDFAGGISIRNSTSRGYRMPPSALLNLTHGERKNGARPSTV
VKMPAEQMQGQIHRQNQASSDLRYTDAWGGKSGVNRGNQSQGHQRNQGYHDNRAGNNSGQ
RGHQTSNTEYDRQNRGGYHQQQGQQQGQQYGRQLETHVSKAHQGGVFNGGNIAPKIVAPR
LSKVLAKNGGHGGGVQGVRQTQAANTQRQNQNNSAANTEFEGMWKQSSMPPEGSETDKQG
TSLSHAAAILTTVPSPVPQNMGGQSPEPGTKIDVQSLFSQASRSDRPVSVWDLHRVTRKQ
KPQKNRKGSASLESSSKLEEEKIAKEDKPSVLDSSNKDSKFSVSTSENVSQDLAGGSAHG
TVDSSKGGPKNLPKEKTTPPITTGSSSKKPKRRLATNFGNMQ
NT seq
4629 nt
NT seq
+upstream
nt +downstream
nt
atgggagttctgaaattttaccaatggatatcggaaagatatccgtgtctgtcagaagtt
gtacgagagtttcagcttcctgagtttgacaatctatatctggatatgaatggcatcatt
cacgtttgctcccatcccgaagataacaaccctcactttcgcatcactaaggagaaaatc
ttcgccgctatcacgtactaccttgagtttctgttccgaatgatcaagccacagaaggtg
tgtttcatcgcggtggatggtgtcgctccaaaggccaagatgaatcatcagcggggaaac
agttttaggaaagcacgggaagctgaagaactagagaagcgtgcacgggaaaagggcgag
gtcctgccgacggagaaacgctttaatcccagctgtataaaaccaggtacagaattcatg
gttcaactacaggagcagctgaaatactttgttgtgaagaaagtgagccaagacccgctg
tggaagggtgtacgggtctatctgtccgggcatgagaccccaggtgagggtgaacacaag
atcatggactttatccggacggagagggccgatcccaactacgaccccaacacccgacac
tgcctgtacgggctcgatgctgatctcataatgttaggcctggccacgcacgagccccat
ttttctctgctgagagaggaggtccgttttgaaggcaagtccaagcaaagatcttccaaa
agacctcagacaccagaggagacgacctttcaactcctgcatctatccctgtttcgcgag
tatctcgacattgaattttccgacctcaagggacggttgaaagaatttgagtacaacctt
gagaatgtgatagacgattgggttctgatgggcttcctggttgggaacgatttcataccc
catcttcccaacctccacattaaccaagatgccctacccctcctatggaagacatacatc
gaggttttaccagaatgtggcggttatataaacaacggaggcaaattgaaccttgagaga
tttgaaaaatacctaacagctttgtcaaagtttgactttgaaacattatccgaacaagct
ggagacattaagcggtttcaagggaagaaagcaggggccagtgccgagcagtccgaggtt
ttatcagcggccaggaaacttggcaaaaaccagcaaaagtctgtggaacgtcttcatgca
gggaaccagtttgccctgaatactttgaatagggaggaagtgaaggatgaggagctggga
aacgaactcataccaaggctcgatgattattcagaagaccaagacactgaagattactca
gaggaggacatcttggatgatgagttccggcgccacaaacgccactattacatgaccaaa
ctggagtataagaacgtcacgcctgaggtactgcgtgaccaggctgaaggctatgtgagg
ggaatacagtggatcctgctctactactatcaaggggtccaatcttggagctggttttac
ccacaccactacgcgccctacatgagcgacgtgaaggactttgtaaacatggatttgacc
tttgacattggcacacccttcaatccatttgagcagctgatggccgtgttgcctgtcgct
agtaaagaactgttgcctgtaccttaccagaacttgatgactaacgccacatcgccagtg
atcgagttctatccgctggactttgagacggatctgaacggtaaacaaaaggactgggag
gctgttgtgctcataaccttcatcgatgagcgccgactgctggaggcaatacggtccgtg
tgtgatctgctcaccccagatgaaaaggcccgtaacagtcatgggccacatctgctgtat
gaatatgtagaggagcccggagaaccctatccctccatactgcccgaagcgttccctgat
atagctatcaaccacgccaggttaaccaaggtgcatcaagatgaccaccatattgaccct
gcccggctcaagatgggcatactgcccggggccaggctggacgtgtttttcccaggattc
ccaacactaagacatataccacatagggccgagttgagcaaagaaggtgtgaaagtgttc
caagccaacagccgaggcttcaacacaatgttacatatcaaggcctcagaatcagtgccg
tcgattgaccagattgcccaggaatatctgggtcgtgagatttatgtcagctggccgcac
ctgtatgaggctaaagttgtggccgtctgtgacgacaaatacagcttcagccaagtaaat
gatggcgcaaagggaagtaaacctaaaatacacagtgacacctccgatgacaacatgact
aacatctggtacaaggagaaagacaccatagctgagaggtaccatgatcgactgggtgtg
gtgattggacagactcacatattgctacgggccctgcccatgacaggcagaaagtacatt
cttggttcccatggacgaaccaccatggagaaacagtttggggtccatcctgtcgcgttt
gctctccaggcaactgtcaaggacatagcagtacatgagcccggcttctgtcagtttaca
actctgtcagagtacatgccagaaaaggctgaggtgttcatgttgggctggccccactac
ggctgtcagggggaggtgttggacactgacatgcaaagcggacatgtgagaatcaacctc
tccatcctggaggagcccagcctggcgcatattgttaacaacatgaaggactttgacatc
cagtatgtctctgcctttgtgggggctcagaaactgggaatcagcagtaacctgttgtcc
cgacttacagggaccatctttgttactgtgggctgcgaggaggttgccaaggaacaaatg
aacccttacaggataaatgttggtttgaacctaaagtttacgacgagacaagaggaggtg
ccagggtacacaaggctgcaggacggaaaatgggcttactccttcaagtgtgtagacacc
ctcagggattatatgaaaaagtttcctgacatgtttgacatcatctctaaatctgatcgg
aaacagaacgatttttacgagaatgaagtgattccagagagcagtggctacaagcttaag
aatgtccaggaatatgtcaagggtctggagtgtacgaatgtgaaaacccagaaggcagga
gctgacatcatggctgagggcgttataaaagctctactagaagagacggacaagactgtg
gaggtgaataagaagagacaaaagagagtgaaaatgcaggttaagccacatctactgtac
aggccgatagtaactagcggctccctgatccctgactctagcaccgagtaccagctgttt
gaccgagttgtaaatacgcgtcagggtttttctgtgccgtttggtctccgcggcacgatc
gtgggcatctacccagcagaggtggaggtcaacacggtgtatggggtcatctttgatgag
gactttgctgggggaatcagtatcaggaactcaacaagtagaggctaccgtatgcctccc
tcagcactgctcaacctgactcacggggagaggaaaaatggggcgcggccgtccacagtg
gtaaagatgccagctgaacagatgcagggacagattcaccgacagaaccaggccagcagt
gatttgaggtacactgatgcctggggcgggaagtctggggtcaacagaggcaatcagagt
caaggtcaccagagaaaccagggttaccatgacaacagggcaggtaacaacagcggtcaa
cgtggtcaccagaccagcaacacagaatatgaccgtcagaaccggggtggttaccaccag
caacaggggcagcaacaggggcagcagtatggacgacagcttgaaacccatgttagcaag
gcccaccagggcggtgtgtttaacggtggtaacatcgcccccaagattgttgctccccgt
ctctccaaggttttggcaaagaatgggggtcatggtggaggtgtacaaggggtcaggcag
actcaggcagccaatacacagagacaaaaccagaacaactctgcagccaacacagagttt
gagggcatgtggaaacagtcctctatgccaccagagggctcagaaacagataaacaaggg
acatcactctcacatgctgccgctatcctcaccacagtaccttcccctgtccctcaaaac
atgggaggtcaatctcctgaaccggggacaaaaatagacgtacagtcccttttctctcag
gccagcaggagtgataggcctgtcagtgtttgggacttacaccgtgtcacccgtaaacag
aaaccacagaaaaacaggaagggttctgcatcacttgagagctcttccaaattggaggag
gaaaaaatagcaaaggaagataaaccaagtgtacttgactcttcaaataaagattcaaaa
ttttctgtttcaacatctgaaaatgtaagccaagatttagcaggtggttcagctcatggg
acagttgactcttcaaaaggaggtccgaaaaatctacccaaagagaagacaactccacct
ataacaacaggaagctcttcaaaaaagcctaaaaggagattagctactaactttggcaat
atgcaataa
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integrated database retrieval system
