Mya arenaria (softshell): 128202932
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Entry
128202932 CDS
T09995
Name
(RefSeq) LOW QUALITY PROTEIN: nephrocystin-4-like
KO
K16478
nephrocystin-4
Organism
maea
Mya arenaria (softshell)
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
maea03037
]
128202932
Cilium and associated proteins [BR:
maea03037
]
Primary cilia and associated proteins
Nephronophthisis-related proteins
128202932
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NPHP4_C2_3rd
NPHP4_C2_2nd
Ig_NPHP4_2nd
Ig_NPHP4_4th
Ig_NPHP4_1st
Ig_NPH4_3rd
NPHP4_SK
ASH
Motif
Other DBs
NCBI-GeneID:
128202932
NCBI-ProteinID:
XP_052760074
LinkDB
All DBs
Position
9:57314063..57347252
Genome browser
AA seq
1483 aa
AA seq
DB search
MAAVATGKSWRDFFGKNLQLPAAFDREHAATDISTPICISLTNVEGINPTVEGVSNVEFQ
LRISLFDLAYHQFFGRQWAGQYEGLHGLGGASKPKLRLSQNVYFHTSIVSSNVVVVVELV
ASGLDENSRLKKVSCGWGIIRPFKEEDLPDTSRNIKLHVQKCQLYHGTPRALFFLDEPVE
DHPELRPIADCQLGYTLATHKALYKVQHLLPENTVVGHNDVIPGLQDNDTSAKDKLKKPK
QLKSMACTIEHATLQLNPTVEKFEEELCETLHEDRLAMMGKVNDGTSIAIVERRLLVGVH
NGWTFVEKPQTFLLDSRNIASKSIKPSASPSFRRSQRFKSSQKLTEDDSLGTGNYLILNQ
KIHVNDILEDPMFAVAFILEYVIGEQLSAEDRKMSKSIQRGNTRSVTLRWAAWNPFLQPN
TPHVTVGLVGGPTPSPDGEFVFKVPDTAMQDEISSRTAGGLLAFQWGFGIKDSASSGTHI
TQPNAYNAGFAQQAMGSAHSMRSGFTEGSEMGVGMTESPSQMMKPPSGRQLSQRGPAGPT
SLAVPQQQLQPQAGSVLQSGQMVPMQQYPMYPQASLQQSYIPYHQGPVPQYGMPYGSEMQ
EMQQHIPAHQPILTTAPVPKKGSGLSRAAYAKLYSVGFPPVLDRSGEPPEVIDPNTHVVT
VDLQRELNDPLQCNEIIFQFLAFSRMSDPAGTTEPGKTAGTVFFSFQFYRNQQVTSERLL
LSKPQNDLSSDAAVMPYILSKLDKDGTLLKGPPGLEVRYFMDPAFMKPGENQMLLQHLSQ
QTMYIDVWDGDSLLPLGSTAVDLKYLCRCGMEAVQTTFELDVISTEYQEDPNLAHPDSGA
GGVRPANVFSIPRGKLHLRMANIGHPVDPKATTAGLSSQGLPSFTMDQSSVYVSLPTKSL
QVVSATASNSAYGGGSLIAGDTKLKTGLATKKRIARAHHLAENNREVAALLFSKHTELET
VTESNREADSERQRKLARMAAIRNMEGSIEKPQTLMAHKQLKTERARDLKTIEIYRLQTK
KDGIQSMLSQSISTEHTIHPSFGTAEYFEFVLRNPFNVEHHVRIEWEDKSLQCITDTREW
RYFKQLHQVQSAMEEGMFSKEAKSSFPEIFLRPKETVNVPFKYVLFKADQSVQPQGPIDP
FRQEPKTKARPTDALRPKSLKVFFKNEDEKPLAILLLKVEPQPHIIDQTFRFHSPEQTFL
KKSIRLPPLEGLPGAPVGSGNAVKAYARCSDPNIICDTKTTQPGEPQDVFLKVPLGASPQ
IKRFFMAVYLDPFMARPVQIWQFYVHALQRVDVSAVEGQTSRFSLLLRGTQASRLVQCYS
SHPGEMSLTPRNSFMLAAGAVHELNVALRPMLEGTKFFYLNVVDVEFHQLVRTWLICVSS
RAPMISRAFELVLPVGGGKGCSKKITYTNPYPHKKTFVLHSNRDDLLQFKDGSLDIEGGG
TVTIGLRFTPVTKAGQAEILVFINDEDDKNEETFKIAAMYQRM
NT seq
4452 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggtggcgacaggaaagtcttggagggatttctttgggaaaaaccttcaatta
ccagctgcatttgaccgtgaacatgcagccacagatatatctactcctatttgtatcagc
ctcacaaatgtagaaggcataaaccccactgttgagggagtgagcaatgtggagttccag
cttcgcatcagtctctttgacctggcttatcaccaattctttgggcgccagtgggcaggg
cagtatgagggtctacatgggttgggtggggccagcaaacccaagctacgtctctcacag
aatgtttatttccacacgtccatagtaagctccaatgtggttgttgtggtagagttggtg
gcttcagggcttgacgaaaacagccgactaaaaaaggtgtcatgtggctgggggatcatt
cgccccttcaaagaggaagacttaccggacacatccaggaatatcaagctccatgttcaa
aagtgccagctgtatcatggcacacccagggccctgttctttctagatgagccagtggaa
gaccacccggagttgcgacccattgctgactgtcagctgggctacacactggccactcac
aaagcattatacaaggtacaacatcttctgcctgaaaacactgtggtcggccataatgac
gtcattcccggactgcaggataatgatacctcagctaaggacaagcttaagaaacccaag
cagcttaagtcaatggcgtgtacgattgaacatgccactcttcaacttaacccgactgtg
gagaaatttgaggaagaattatgcgaaacactgcatgaagataggctagccatgatgggg
aaggttaatgatgggacatctatcgccattgtggagagaaggctgctggttggcgtccac
aatggctggacgttcgtggagaagccccagaccttccttctagattcccgcaacatcgcg
tccaagtccatcaaaccttccgcaagtccgtccttccgacgttcacagagattcaagtca
tcacaaaaactcactgaggatgatagccttggtactggaaactatctaattttaaaccag
aagatccatgtcaatgatatcctggaagacccgatgtttgctgtggcgttcattcttgaa
tatgtcattggtgaacagctgtctgcagaggacaggaagatgtcaaaaagtatacagcga
ggtaacacccgttcagttaccctacggtgggccgcctggaaccccttccttcaaccgaac
accccacatgttactgtggggcttgtaggtggtcccacccctagcccggatggagaattt
gtcttcaaggtcccagacacggccatgcaggatgagatctcctctagaacagcaggcggg
ctgctggcattccagtggggattcggaatcaaggacagtgcttcttctggaacccacatt
acccagcccaatgcatataatgcgggctttgcccagcaggcaatgggctcggcccactcc
atgagatcaggcttcaccgaggggagtgaaatgggtgtggggatgacagagtccccatca
cagatgatgaaaccacccagtggacgccaactttcacagagaggaccagctggtcccacc
agcctggcagtgccgcagcagcagttacagccccaggcaggcagtgtgttacagtcagga
cagatggtgcccatgcagcagtacccgatgtacccccaggcctccctacaacaatcctac
ataccctaccatcagggtcctgtgccacagtatggcatgccgtatgggtcagagatgcaa
gagatgcagcagcacattcccgcccaccagcccattcttactactgcacctgtccccaaa
aaaggatctggcttgtcccgtgctgcttacgctaagctttactcagtgggtttcccgcct
gtgctagaccgaagcggagaaccacccgaggtcattgacccaaacacgcatgtggtcacg
gttgacttgcagcgggaattgaatgaccccctgcagtgtaatgagatcatcttccagttc
ctggctttctcaaggatgtctgacccagctggaacgacagagccgggaaagacggcaggc
acagtcttcttctccttccagttttaccgtaatcagcaggtcacaagtgaaagactgtta
ttgtcaaagccccagaatgacctatcatctgatgcggcagttatgccctatatactctca
aaactagacaaggatggcactttactcaagggaccacctggactagaggtgcgatacttt
atggacccagcgtttatgaagccgggtgagaaccagatgttacttcaacatctatcccag
cagaccatgtatattgacgtctgggacggcgattccttactgccactgggtagcactgct
gtagacctcaagtacttatgtcgatgtggtatggaggcagtccaaacaacatttgagcta
gatgtgatatccaccgagtaccaggaagacccaaatcttgctcatccggactcaggagca
ggtggagtaaggcccgctaacgtcttttccatcccacggggaaaactccacctccgaatg
gccaacatcggtcatccggtcgatcccaaggctacaactgcaggtttaagcagtcaaggt
ttgccgtcatttacaatggaccaaagcagtgtgtatgtaagtcttccaactaaaagtctt
caagtcgtctcggcaactgcgagtaattctgcctatggaggtggaagtttaatagcgggg
gacactaaactgaaaactggtctagctaccaagaagcgaattgctcgtgcccaccatctc
gctgagaataatcgggaagtggcggccctgttgttttccaaacatacggagctggagact
gtcacagagtcaaatcgggaggcggactccgagcgccagaggaaactcgcgagaatggcc
gccattcggaatatggagggcagcattgagaaacctcaaacacttatggctcataagcag
ttgaaaaccgagagggcccgtgatcttaaaacaatcgagatatatcgactacagacaaaa
aaggacggcattcagtctatgctcagccaatccatctcgacggaacacaccattcacccc
tccttcggcactgcggagtactttgagtttgttctacgcaacccattcaatgttgagcac
catgtcaggattgagtgggaggacaagtctttgcagtgtataacggacacccgtgaatgg
cggtactttaagcagctccatcaagtccagtcagccatggaagaaggcatgttcagcaaa
gaggcaaaatcttcattcccggagatctttctaaggccaaaggagacggtcaatgtgcca
ttcaaatatgtcttgtttaaggcagaccagtctgtacaacctcagggaccaatagatcca
ttccgacaggaaccgaaaaccaaagcccggccaacagatgctctcaggccaaagtctctc
aaggtgttttttaagaatgaggatgagaagcctctggccatcttgctgttgaaggtggaa
ccccagccccatatcatagaccagacattcaggtttcatagtccagaacagactttcctc
aagaaatccatcagattacctcccttggaaggtctcccaggagctccagtgggctctggc
aatgctgtgaaagcctatgcgagatgcagtgatcccaatattatctgtgatacgaagacc
acacagccaggagagccccaggatgttttccttaaggtccctctgggagcttccccacag
ataaagagatttttcatggccgtatatctagacccatttatggcacggcctgtacaaatc
tggcagttttacgtacatgctctacagagggtggatgtgtctgcagtggaggggcagaca
agcagattctcacttctgcttagaggcacacaggcatccagactggttcagtgttactcg
tcacacccaggagagatgtctctaacccctcggaacagtttcatgttggctgctggtgca
gtacatgagttgaatgtcgctctgcgtcccatgctggagggaaccaagtttttctacctc
aatgtcgtggatgtagagtttcatcagcttgtacggacttggctcatatgtgtcagctct
cgtgcaccgatgatttcacgtgcatttgagcttgttttgcccgtcggtggaggcaagggt
tgtagcaagaagataacatacactaatccgtaccctcacaagaaaacatttgttcttcac
tcaaatagagacgatttgctccagtttaaggacggttcactagatatcgagggaggcggt
acggttacaattggtctccgatttacgccagttactaaggcgggccaagcggaaattctt
gtgtttatcaatgatgaggatgataagaatgaagagacatttaagattgcagcaatgtat
cagagaatgtag
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