Mya arenaria (softshell): 128202943
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Entry
128202943 CDS
T09995
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
maea
Mya arenaria (softshell)
Pathway
maea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128202943
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maea03019
]
128202943
03012 Translation factors [BR:
maea03012
]
128202943
Enzymes [BR:
maea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128202943
Messenger RNA biogenesis [BR:
maea03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
128202943
Translation factors [BR:
maea03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
128202943
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2_C
OB_NTP_bind
Helicase_C
DEAD
HA2_N
nSTAND3
AAA_19
AAA_22
ATPase
ABC_tran
PhoH
ResIII
NPHP3_N
TsaE
AAA_16
DUF3294
Motif
Other DBs
NCBI-GeneID:
128202943
NCBI-ProteinID:
XP_052760099
LinkDB
All DBs
Position
9:40398584..40433131
Genome browser
AA seq
1118 aa
AA seq
DB search
MRLPIPSLTGLFITKRVISENAYIVHGLRFSHILGMSAGGWGSGSDWKDRRGEDRWHGNS
GRRGRKGYHGNRGIHRGKRGNWDGQEREGADNAQSDGASYQGEWDTPSRGRGRGRGSSGH
GGRPPGLRGKDIGMFYAQKSRAKKEQMIKEQRAEVTLEGDQRRSITRLLDDIRSSRDCPP
QPDRYNEHARETIAEDMEASSSTAYDARGMSSDGEDEAIVPMVTEVLQYNEEEGLFLQEE
ENLSEIVSEAFDRKQWQNSSISEDFAKKQQTRAYQDMQKFREKLPAFANRQAIVDMISQN
QVVVLSGETGCGKTTQVPQFILDDYIAQGRGAECRIICTQPRRISAISVAERVASERGEG
CGDSAGYMIRLEHKLPRDHGSILFCTTGILLKMLEGDKLLSRATHIILDEIHERDLLSDF
LIIVLKDILAKRPDLKLVLMSATLNADAFSKYYDNCPMINIPGFTYPVEECLLEDVIEML
HYQVPKTMIARQPKRRDFKAQQEREDIGVWLRNLEGGVNIDKRYSRNTINQLQQLDMNKV
DTELVYQLIRYISLSKSDGAILAFVPGWGEINEVYKKLKADSVFNPSSYVIVPLHSLMPT
VNQREVFSRPPPGVRKIIIATNIAETSITIDDVVYVIDGGRIKVKGFSPETNMSSLDSEL
VSKANSRQRRGRAGRVQPGECYHLYSGYHQSIMADYLPPEILRTRLEELCLTIKLLNLGK
IMPFVQKAIQPPSLAAVQSAIVNLQQLNALDKDENLLPLGKHLSRMPLDPHTGKMILYGA
MFKCLDPILTIAASLSFKDPFYAPLEKKAEADKARMGLAENCLSDHITLVKAFDGWDRAR
QRGTHRKFCFDNFLSESTLMMLKKMREQLADVLYELGFLESKLPKQAEANMHSKNNALVK
AIVCAGLYPNIGRIDKIPKNKWSQIKFRLKEGQCKLFPGSVAKAVSDPRACWVVYHKIMK
TSDVWMYDCSLVSPYSLLFFGGDIKCSMEGGQNLVCVDDWIKFKASPDTVQLVKELRQEL
DNILEERFSRGSRKVSHGQKSKEEAVMQAISSLVTSEDKIEKGGDYLRDDRHSGNRGHLG
DKSDRRNSVGGASGRDDSYFARGKRERDHRYFYDDEDD
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgcgtctaccaattccaagtctgacaggacttttcataacaaaaagggttatttctgag
aatgcatacatcgtacacggactacgcttttctcacattttaggaatgtcagccggaggt
tggggttcaggctcagactggaaagacagaaggggtgaggatcgttggcatggcaacagt
ggtcgtcggggcaggaaaggttaccatggaaatagaggcatccacaggggaaaacgcgga
aattgggatggtcaggagagagaaggagcagataatgcacaatctgatggcgcatcatat
caaggggagtgggacactccgtcccgtggtagaggacggggcaggggatcctcagggcat
ggcggaagaccccctggactgaggggaaaggacattgggatgttttatgctcagaaatct
agggcaaaaaaagaacaaatgatcaaggaacagagggccgaagtcaccttggaaggagac
cagagacgctccatcacaagactattggacgatatacgctccagtcgtgactgcccccca
cagcctgacagatacaacgaacatgctagggaaactatagcagaagatatggaagcatct
tcttcaacagcatacgatgcaagaggtatgagcagtgatggtgaagatgaggccattgtt
cctatggttactgaggtcttgcagtacaacgaggaggagggtctttttctacaggaagag
gaaaatctttcagagatagtgagcgaggcgtttgacagaaaacagtggcagaactccagt
atatcggaggactttgccaagaaacaacagactcgtgcttaccaggacatgcagaaattc
agagagaaactgcccgcgtttgccaatcgacaggcaatagtggacatgatttcacaaaac
caggttgtggtgctgagtggggagacaggttgtggcaaaactactcaagttccccagttt
atcttggatgactacattgcacaaggtcgtggcgctgagtgccgcattatttgtacacaa
cctcgaaggatcagcgctatatcggttgctgaaagagtagcatctgaaaggggcgagggt
tgtggggactcggctggctacatgatacggctcgaacacaagctgcctagggaccatggc
tctattttgttctgtaccaccggaattctcctgaaaatgttggagggagataaattgcta
tcgagagccactcacattattttagacgagattcacgagcgagacttgctgtctgatttc
ctcataattgtgctgaaggacattttggccaagagaccggaccttaaactggtcctcatg
agtgctacactgaatgctgatgctttctccaaatattatgacaactgtcccatgatcaac
atacctggcttcacctaccccgtggaggaatgtcttctggaagacgtcatcgagatgcta
cattatcaggtaccaaagacaatgattgctaggcagcccaaaaggcgggatttcaaagcc
cagcaggagagagaagatataggggtgtggcttagaaatcttgaaggcggagtcaacata
gataaaaggtattctcgcaatacaatcaaccagctacaacagctggacatgaacaaagtg
gacacggagcttgtttatcagctcattcgatacatctcactctctaaatcggatggtgct
attctggcgtttgtacctggatggggcgaaatcaatgaggtctacaagaagttgaaggct
gacagtgtgttcaatccatcctcgtatgtgatagtcccacttcactccctcatgccaact
gtaaaccagagggaggtattctctcgtccccctcctggagttagaaagatcatcatagca
actaacattgctgaaaccagtatcaccatagatgatgtggtgtatgtgatagatgggggt
cgtatcaaggttaagggattctctccggagaccaacatgtcttctctggattctgagctc
gtatcaaaggccaattctagacagcgcagaggaagagcaggaagggtacagccaggtgag
tgttatcacctgtattctggctaccatcagtctataatggcggactacctacccccggag
attctacggacaaggttggaggagctttgtcttaccataaagctattgaaccttggtaag
attatgccgtttgtgcagaaagcaatccagcccccatcactggccgctgtgcaaagtgcg
attgtgaacctacaacaactgaatgccttggacaaggatgagaatctcctgcccctgggg
aagcacctgtccaggatgcccctggacccccacacgggcaagatgatcctatatggagcc
atgtttaagtgcctggacccaattctcaccatcgctgccagtctctcctttaaggaccca
ttttatgcccccctggagaaaaaggctgaggcagacaaggctcgtatgggtctggcggag
aactgtctgagtgatcacatcaccctggtcaaggcatttgatggttgggatagagcaaga
cagaggggaacccacaggaaattctgctttgacaactttctgtcagaatcaacacttatg
atgttgaagaagatgcgtgaacaactggcagacgttctgtacgaactcgggttcctagag
agtaaactccccaagcaagcagaggctaacatgcactctaaaaacaatgctctagtgaag
gcaatagtttgtgcaggcctgtacccaaacatcggcagaattgacaagataccaaaaaat
aagtggagtcaaataaagtttcgtctgaaagaaggtcaatgtaagctgttcccgggctcc
gttgccaaggctgtcagtgaccctagagcatgctgggtagtttaccacaagatcatgaag
acctcagatgtatggatgtatgactgtagtctggtttccccatacagtttgctgttcttt
ggaggtgacatcaaatgtagtatggagggaggtcagaacctggtatgtgtggatgactgg
atcaagttcaaggcctctccggacactgtacagctcgtgaaggaacttcgtcaagaactg
gacaatattttggaagaaaggttttcccgcgggagtcgaaaagtttcccatgggcaaaaa
agcaaagaagaagcagtgatgcaggcgatctcaagtctcgttacatcagaggataagatt
gaaaaagggggcgattacttaagggatgacagacattcgggaaatagagggcatcttgga
gataaatcggacaggagaaattcagtgggtggggcaagcggaagagatgatagttatttt
gcaagggggaaacgtgaaagggatcatcggtacttttatgatgatgaagatgattag
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integrated database retrieval system
