KEGG   Mya arenaria (softshell): 128204248
Entry
128204248         CDS       T09995                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
  KO
K12857  Prp8 binding protein
Organism
maea  Mya arenaria (softshell)
Pathway
maea03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:maea00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    128204248
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:maea03041]
    128204248
Spliceosome [BR:maea03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    128204248
 Complex C
   U5 SnRNP specific factors
    128204248
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WDR55 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_IFT122_1st Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_TEP1_C Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_SPT8 WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_DCAF4 eIF2A WD40_RFWD3 Ge1_WD40 Beta-prop_RIG_2nd Beta-prop_IFT140_1st WD_LRWD1 Beta-prop_WDR19_1st Beta-prop_WDR75_2nd RMC1_N PEP5_VPS11_N Beta-prop_Nup120_160 Beta-prop_DCAF12 Nbas_N PROPPIN Cytochrom_D1
Other DBs
NCBI-GeneID: 128204248
NCBI-ProteinID: XP_052761597
LinkDB
Position
10:complement(74257260..74272081)
AA seq 345 aa
MDAKRKAMEGAIIPAKRPRNELVAFNEKENALMQSGIQRLSSLEAPIMLLSGHEGDVFCT
KFSPDGRMLASAGFDRLIYFWNVYGECDNFAVLKGHTGAIMEIQFTTDGSNLISASTDKT
MALWDVDVGERIKKFKGHNGFVNCCNVARRGPQLVCSGSDDQTIKMWDSRKKGVLQTFQN
TYQVTAITFSDTAEQIFSGGIDNDIKVWDLRKNDVLYRMRGHSDTVTGMHLSPDGSYLLT
NSMDNTVRIWDVRPFAPQERCVKIMQGHQHTFEKNLLRCAWAPDGSKVGAGSGDRFVYVW
DTTTRRILYKLPGHAGSVNEVVFHPEEPIVASCGSDKKIFLGEIE
NT seq 1038 nt   +upstreamnt  +downstreamnt
atggatgcgaaacggaaagcaatggagggtgccattatacctgccaaacgaccccgaaat
gaacttgtggcattcaatgaaaaagaaaatgcgttgatgcaaagtggaattcagaggctg
tccagcctggaggccccaatcatgttgctgtcgggccatgagggtgatgtgttctgcaca
aagttttccccagatggacgcatgctggcttctgctggattcgataggcttatttatttt
tggaatgtgtacggggagtgtgataactttgctgtgttaaaaggtcacacaggagccatc
atggaaatacagttcacaacagatgggagtaacctaatatccgcgtctacagacaaaaca
atggcactgtgggacgttgatgtgggagagcgcataaaaaagtttaaaggtcataatggc
ttcgtgaactgctgcaatgtggcccgacgaggacctcagctcgtctgcagtggcagcgat
gatcagacaatcaagatgtgggatagccgtaagaagggagtgttgcagacgttccagaac
acttaccaggtgacggccatcacgttctccgacactgcggagcagatcttctccggtgga
attgacaacgatattaaggtttgggacctacgcaagaatgacgtcctgtacagaatgcgg
ggccactcagacacagtaactggaatgcatctgtcaccagacggctcttatcttctcaca
aactcaatggataacacagttcgtatctgggatgtacggccattcgctccacaagaacgc
tgtgtaaaaatcatgcagggacaccaacacacatttgaaaagaatctgctgcgatgtgcg
tgggcgcccgacggaagtaaggttggtgcgggctcgggcgacaggtttgtgtatgtgtgg
gacacaactacacggcgaatactgtacaagcttcctgggcacgctggctctgtgaatgag
gtcgtcttccacccagaagagcccattgttgcgtcatgtggcagtgataaaaagatcttc
ctgggagagatagaatga

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