Mya arenaria (softshell): 128205838
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Entry
128205838 CDS
T09995
Name
(RefSeq) antiviral innate immune response receptor RIG-I-like
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
maea
Mya arenaria (softshell)
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
maea04054
]
128205838
Enzymes [BR:
maea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128205838
Pattern recognition receptors [BR:
maea04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
128205838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
DEAD
ResIII
RIG-I_C
Helicase_C
SWI2_SNF2
HemX
Cas3-like_C_2
SmaI
Motif
Other DBs
NCBI-GeneID:
128205838
NCBI-ProteinID:
XP_052763804
LinkDB
All DBs
Position
10:49787675..49802149
Genome browser
AA seq
1296 aa
AA seq
DB search
MEELSQEENNFHRIQLLTETCLLRALRQLLRQGPRIVTSDGRSYLLPFSKFIADNDVKRC
LNEYFNLRRGSPLGQGHTFDLPNENTMTNIDGLDLENVLVMVCIYIKKDAEPKDILKRCT
EIYNELNQKQKLSNVDFNAMFVRLKYLSLEISDYLQDQELKQNMSALIPRCKKQSIATDL
PFANIFENKLNIDEINTIVGKYCTTFDKIGISKTLSTDSGVGTEIQSGPEAYNTDMPSPH
NEDPKKKNDGESILTSHISCESGFSEDTPEQEPEVAIMGVTKINGEDEPKAKKRRIDITN
DKLPAPNVSPESSSVDGEIITLTATTDYELGDIEQNTPTSDIHQHADIMKDCSGHDNNTN
KSPASVPMKGESGPLQAKKRRIDITPDKLPLSNVSPGMSNSVDEEIIALYATTDYELNER
GHIEHNTSTSDIHQQANVVEGCVGHDTHTNMSTASEPFKGHMSPLLIFHCSADEALARSI
AAGLEDSFGFVPTVMALTTMQAYGVHNFRNLKDTFTILGRGMLIVTNDTSEEFQDYARRF
VKELPPDLSETITLVLQTVTKEDFGIDETFTGKLLEFKHKNDVNIPKISLALNDAISVRG
YQKELAEKACDGHNVIIMAPTNAGKTQVACKIVEMHFQNFNTRTPRVLFLVENEALALQQ
GQVCEKLLRWKRTKVFTGNTQRSKSQYIWDYLDKRDIFVVTAQILVNALKAGKIESLQEF
SLIVFDECHHSKKQHMYNELMSKYLDLKIKCDLSGSDLPQIVGLTASLGVGGKTLAVYGL
KYMKQIVANMDAKFLCTIRSEASKTELRKYVSSPKEALIGVESRANDVFKKALEDIAQNI
SEYINTDQTVMGASIEDKERLQDCNIPLTFGTDAYQQWSSEFVQTIAKIDSDDIRRVLEP
CSKYLEVYNKALLVYNDARLTEAMAILSEFIDDVREVETDHSADSFLLGTYNDLLQRTSG
FEDRNPKLMKLQEILEENLLPFTESRGIIFVKTRELAAALVDWINNTEPISALNAAQFVG
QGNESSDGGMTKVRQKDVLGFFKKGVHRVVIATSVAEEGLDITQCNLVIRYMHVTNEIVR
LQSRGRARAEDSKYFVIAEKGSPILDKEEKNKRCEEIMNEIVPDLQVYLEKPENNWETEM
LEMQKAMKNKEDQMQRERLDNMSDDACEFQCMKCSSFICLSEDIRTIKGSFHIVVNIDIN
GRIRLQRGKPVFIEPDDVEYGGKIFCMQSDCQKELGTLCTYRDIVFPVIKLKLVRVVNKN
GDGNKYKKWKQLTCRIHELSDDEFYSLVEERKTNLF
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
atggaagagctctctcaagaagagaataatttccatagaatacaactccttacggagaca
tgtttgttaagggctctaagacaacttttaagacaaggtccccgtatagtgacttcagat
ggtagatcatacctgcttccgttcagtaagttcattgctgataatgatgtaaaaagatgc
ttgaatgaatacttcaatcttcgacgtggatcacctctagggcaaggtcacacatttgac
cttccaaatgagaacacaatgaccaacattgatggtttggatcttgaaaatgtccttgtt
atggtctgcatatacatcaaaaaagatgccgagccaaaggatattttgaaaagatgtaca
gaaatttacaatgaattgaatcagaaacaaaagttgagcaacgttgactttaatgcgatg
tttgtacgtttgaagtatttatcattggaaatttcagactatttgcaggaccaagaattg
aaacaaaacatgagtgctttgatacccaggtgtaaaaaacaaagcatagccactgatctg
ccttttgctaatatattcgaaaacaaattaaacatcgatgaaattaacacaatagttggc
aaatactgtaccacattcgacaaaatagggatttcaaaaactttgtctactgactccggt
gtgggtaccgagatacaatcaggaccagaagcatacaacactgacatgccaagtccacat
aatgaagatccaaagaagaaaaatgatggtgaaagtattctgactagccacatttcttgt
gaatcaggcttctcggaagacacccctgaacaagaaccagaagttgctataatgggcgtc
acaaagataaacggagaggacgaacctaaagcaaagaaaaggcggatcgatatcacaaat
gacaagctacctgcgcctaacgtaagccctgaaagttcctccgttgacggagagatcatc
acactaacagctaccacagactatgaacttggtgatattgaacagaacactcctacttct
gacatacatcagcacgcggatattatgaaagactgttcaggacacgataacaacacaaac
aagtcgccagcatctgtgcctatgaaaggtgaatcagggcctttgcaagcaaagaaaaga
cggatcgatatcacacctgataaactgccgttgtccaacgtaagccctggtatgtccaat
agcgtggacgaagagatcatcgcactatacgctaccacagactatgagctcaatgaacgt
ggtcatattgagcacaacacatctacttctgacatacatcagcaagcaaatgttgttgaa
ggatgtgtcggacacgatacccacaccaacatgtcgacagcatcagagccttttaaaggt
catatgtctccactgctcatatttcactgctcagccgatgaagcccttgcacgttctata
gctgccggacttgaagattcatttggatttgttcccacagtgatggcattaacgaccatg
caagcgtatggtgtacataactttcggaatttaaaggatacgtttactatacttggacgt
ggtatgcttatcgtcacgaatgataccagtgaagagtttcaggattatgccaggaggttt
gtaaaggaactgcctccagacttgtccgagacgataacattggtccttcaaacagttacc
aaagaggattttggaatagatgaaacgtttacagggaagttacttgaattcaagcacaaa
aatgatgtcaacattcctaaaatttcccttgcactaaacgatgcgatatcagtacgcgga
taccagaaagagcttgccgaaaaagcatgtgatggacacaatgttataatcatggcgccg
accaacgcaggcaaaacacaggtagcctgcaaaattgttgagatgcacttccagaatttc
aacactagaacgccgagagtcctgtttctggttgaaaatgaggccttagctttgcagcag
ggtcaggtctgtgaaaaactgttgcgttggaaacgaacaaaagtatttaccggaaacaca
cagcgctcgaagagtcaatatatatgggattatttagataagcgggacatattcgttgtc
acagcacagattctggtcaacgctttaaaagctggtaaaatagaaagtttgcaagagttc
agcctgatagtatttgatgagtgccaccattcaaagaaacaacacatgtacaatgaactc
atgagcaaatatctggacttgaaaataaaatgcgatctcagcgggtcggatcttccacag
atcgttggtttgaccgcttcccttggtgtaggaggaaagacgttagcagtctacggactt
aaatacatgaaacaaatagttgctaatatggatgccaagtttttgtgtacaattcgaagt
gaagcgtcaaagacagagctgagaaaatatgtcagctccccaaaagaagcgcttatcggc
gtggaaagccgagccaatgatgtttttaagaaagctctggaagatattgcacagaatatc
agcgaatacatcaacacagatcaaactgtcatgggagcctctattgaagacaaagagcga
ttacaagactgcaatatcccactgacctttggaacagacgcataccagcagtggagttct
gaatttgtacaaacaattgcaaagattgattccgatgacataagacgagttcttgagcca
tgttcgaaatatcttgaggtatataacaaagctcttctagtttacaacgatgcacgacta
accgaagcaatggcgattctttcagagtttatagacgacgttagagaggtagagactgac
cattcagcggacagtttccttcttggaacctacaatgatttgctacaaaggacgtctggt
tttgaagatagaaaccctaagctgatgaaattgcaagaaatcctggaagaaaaccttcta
ccgtttacagagtctcggggaataatatttgttaaaacaagagagttagctgctgccctt
gttgactggataaataacacagaaccaatcagtgccttgaacgctgcgcagtttgttggc
caaggaaatgagtcttcagatggtggtatgacaaaggttaggcaaaaggatgttttggga
ttcttcaaaaagggtgtacatcgggttgttattgcgacctctgtcgcagaggagggatta
gacatcacccaatgtaaccttgtcataagatacatgcatgttacaaacgaaattgttcgt
ttacaatctagagggagagcaagggcagaagatagcaaatactttgtaattgccgagaaa
ggaagtcctatcctagataaagaagaaaaaaacaaacgatgtgaagaaataatgaatgaa
attgtcccagatttgcaagtgtatttggagaagcctgaaaacaattgggaaacagaaatg
cttgaaatgcaaaaagccatgaagaacaaggaagaccaaatgcaacgcgaaagactagat
aatatgagcgatgatgcttgcgaatttcagtgtatgaaatgcagttcatttatttgttta
tctgaagatatacgcacaataaaaggttcatttcacattgtcgtcaatattgacataaat
gggcgaataagactgcagaggggtaaacctgtttttattgaacccgacgatgttgaatat
ggcgggaaaatattctgtatgcaaagcgattgccaaaaagaactaggaacactttgcacg
tacagagatattgtgtttcctgtgatcaaattgaaattggttcgagtggtgaacaaaaat
ggagacggaaataagtacaagaaatggaaacaactcacttgtcgcatccatgagctgtcg
gatgacgaattctactccctggtcgaggaaagaaaaacgaacttattttag
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