Mya arenaria (softshell): 128207715
Help
Entry
128207715 CDS
T09995
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
maea
Mya arenaria (softshell)
Pathway
maea04137
Mitophagy - animal
maea04140
Autophagy - animal
maea04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
128207715
04137 Mitophagy - animal
128207715
04148 Efferocytosis
128207715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
maea03000
]
128207715
Transcription factors [BR:
maea03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
128207715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
PAS
PAS_9
PAS_4
HIF-1a_CTAD
HIF-1
UCR_hinge
Motif
Other DBs
NCBI-GeneID:
128207715
NCBI-ProteinID:
XP_052766768
LinkDB
All DBs
Position
11:complement(16567872..16627896)
Genome browser
AA seq
779 aa
AA seq
DB search
MAISHKRRNTEKRKEKSRDAARCRRGKEGEIFSELASQLPLPMTTIDSLDKASVMRLLLS
YLKVRSTMEKRPKLEVPLDDPLMLKLDTMYPKALDGILLLLSKEGDMIYISESVSKLLGL
QQIDVMGQSIYDYAHPCDHEEIQEVLSPRSEEEGEGVAKTIFIRLKCTLTSKGRNVNLKS
ASYKVIKLTGRYIADHNVETVCEDDVLMRDPEEEDSEDEVRPFKPHPMPHFLAIAEGIHH
PANIEVPLDRRTFISRHSMNMKFTDCDDRVKRLIGYPSEDLIGQSFFAYHHAIDSKMMDK
AFKDLFSKGQISTGQYRFLAKNGGYVWMVTEATVIYNGKTQKPENVVCVHYVLSHVEQHG
RVLASSQLVTSAPVVKQEVSPAHSPITRLPSPHVPSPCMPSPKQEEPANRPTCAAQSTTR
VQQRVPRRDVKVADLFHLPKFSTEAVFAKKTDEMEEDFFPLDTKKHVGRNGLLDLTRHVQ
RDRDGCIPHDRPTPTAKTGLSQLSPYSERMRDPKKDPHLAPFIRRERSPCTSSGFTSPDR
RSPEQTMSGVPSPPGYLTTINPKDISAMDNLFTTLDTVDHDQDIDFEMRAPYIPMAAEED
HILIEPPSDTYLNMGTDFNPGIFGCTESVFSLKDDIYEGVGPEKRSMSTRDMIGDSTVKK
SIERPQDQMTMKMKRPLDRSCLEKGPPAPKILKYQPAFHISPNPVMRPRRDSSVLMNLLL
RGEDAVHGYIVPNKQNISQSKGRHNGQLTSHDIEVNAPSNTRGLLYGMDLVNALNMARK
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atggcaatatcacacaaacgaagaaatacggagaaaaggaaggagaaatcgcgggatgcc
gccaggtgtcgccgtggaaaggagggcgagatattttcagaactagcgagtcagttgcca
ctaccaatgacaaccattgactcgctggacaaggcctccgtgatgcgactactgctgagc
taccttaaggttcgaagcacgatggaaaaacgtccaaaactggaggtgcccttggatgac
ccgctaatgttaaagctggacacgatgtacccaaaggccctggatgggatcctgctcttg
ctctccaaggaaggcgacatgatatacatctctgagtccgtctccaagctcctgggacta
cagcagattgatgtgatgggtcagagcatctacgattatgcccatccatgtgaccatgag
gagatacaggaagtactctcccctcgctctgaggaggagggggaaggtgtggctaaaacc
atcttcatacgtctcaagtgtaccctcaccagcaagggacgcaatgtcaacctcaagtct
gcctcgtacaaggtgatcaaattgacgggacgttacattgcggaccacaatgtggagaca
gtgtgtgaggacgatgtgttgatgcgcgaccctgaggaagaggacagtgaggatgaggtc
cgccccttcaaaccacacccaatgccccactttctggccatcgccgagggcatccaccat
ccggccaacattgaggtcccgctggacaggcggactttcatttcacgtcatagcatgaac
atgaagttcactgactgcgacgacagggtaaagcgtttgattggctacccatcagaagat
ttgattggccagtcattcttcgcttaccaccacgccatcgacagcaaaatgatggacaag
gcttttaaagatttgttttcaaagggccagataagcaccggtcagtatcggttcctggca
aagaatggaggatacgtttggatggttaccgaagcaacagttatatacaacggcaagaca
cagaagccagaaaatgtcgtctgtgttcactacgtcctcagtcatgtggagcagcatgga
cgtgtgctggcatcaagccaactagtgacgtctgctccagtggtgaagcaggaagtgtca
cctgcccactctcccatcacacgcctcccgagcccccacgtaccaagcccctgcatgccc
agccctaaacaggaggagcctgccaataggcccacctgtgcagcccagtccaccactcgt
gtccaacagagagtgccaaggcgtgatgtaaaggttgccgatcttttccaccttccaaag
ttcagcacggaggcggtgtttgcaaagaagacagatgaaatggaggaagacttctttccc
ctagacacaaaaaaacatgtgggccgtaacgggctgctggacctgacccgtcatgtccag
cgggatagagatggttgcatcccccatgacaggcctaccccgacagctaaaacaggactg
tcccagctgagcccatacagtgagcggatgagggaccccaagaaggacccacatctggcc
ccattcatcaggcgggaacgaagcccctgcacaagctccggctttacaagcccagaccgt
cgctctcccgaacagacaatgagtggagtcccgagcccgcctggctatctgaccacaatc
aacccaaaggacatcagcgccatggataacctgttcacaacgcttgacaccgttgatcat
gatcaggacatagactttgagatgcgagctccatacatcccaatggcggctgaggaggac
cacatcctgattgagccgcccagtgacacctacctgaacatgggcacagacttcaaccct
gggatatttggttgcacggagagcgtgttcagcctgaaggatgacatctatgagggggta
gggccagagaagcggtcaatgtccacccgtgacatgataggggacagtacagtgaagaag
agcattgagcggccccaggaccagatgacgatgaagatgaagcggcccctggaccggagc
tgcctagaaaaggggcctcctgcacccaaaatcctcaagtatcagcctgctttccacatt
tctcccaatccagtgatgaggccgaggagagacagcagtgtactgatgaacctcctactg
cgaggggaggatgccgttcatggatacatcgtacctaacaaacagaacatatcacagtca
aaaggcaggcataatggtcagttgacgagccatgacattgaggtgaatgctccaagcaac
acgcgaggtctgctctacgggatggacctcgtaaacgcgctcaatatggcccgcaagtga
DBGET
integrated database retrieval system
