Mya arenaria (softshell): 128208234
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Entry
128208234 CDS
T09995
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2-like
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
maea
Mya arenaria (softshell)
Pathway
maea03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128208234
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maea03019
]
128208234
Messenger RNA biogenesis [BR:
maea03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
128208234
U7-dependent histone pre-mRNA processing factors
128208234
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Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
128208234
NCBI-ProteinID:
XP_052767669
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All DBs
Position
11:44100139..44161168
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AA seq
757 aa
AA seq
DB search
MTSIIRLQPLSGAEDESPPCYLLQVDEFRFLLDCGWDEDFSMPVMKEIKRHVHKVDAVLL
TYPDLLHLGALPYLMGKCGLSCPVYATVPVYKMGQMFMYDLFQSRNNSENFNMFTLDDVD
QAFDKIIQLKYSQTVNLPGKGFGLQITPLPAGHMLGGTIWKILKDGEEEIVYAVDYNHKK
ERHLNGCILEGKYFTRPHLMITDAFNANYNQSRRRVRDEQLMTTILQTMRRDGNVMVAVD
TAGRMLELAQLLDQIWRNTESGLTTYSLALLNNVSFNVIEFAKSQVEWMSDKIMRAFEDH
RTNPYHFKHLKLCHNLSELGKIPEPKVVLCSQPDLQSGFSRDLFVAWCGNPKNSIILTNR
TSPRTLARWLIDHPDNKTVTMEVRRRIRLEGAELEEFMKKKHEAEEKEKKKAVQEPEESS
DESDAEMEVDGAVPAPSTSRAKHDIIIKQEGKGRSGFFKQAKKSYPMFPYTEERMKWDEY
GEIIRPEDYMISETTVSDETLSTEKLVAESDQLQDVSEVPTKCIAVTVTLDINASIQYID
FEGRTDGESMKKILSQIKPRQLVLIHGSEEATSSLAEYCRTTSGVVQGSVFTPSIGEVVD
ATTESHIYQVKLKDYLVSALEFSKARDAELAWIDGIINFTESRLDIETDIQEDDEEDAKL
SIVRGREGLENVPILEAVPSNQISGHTAVFINEPKLSDFKVVLLQEGIQAEFSAGALVCN
DTIAVRRNEAGRMQLEGAISRDYFKVRDLLYKQYAIV
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgacatctattatccgactacagccactgtcgggggccgaagatgaaagcccgccttgc
tacctactgcaggtcgatgagtttcgttttctgctggactgcggttgggatgaagacttc
agtatgccggtcatgaaggagatcaagagacatgtacacaaggtagatgcggtactgttg
acctacccagatcttctacatttgggcgccctgccttacctgatgggcaaatgtggactc
tcctgtccggtgtacgccacagttcctgtgtacaagatgggccagatgttcatgtatgat
ctttttcagtcccgtaacaactctgaaaacttcaatatgttcactctggatgacgtggat
caggcatttgataagatcattcaactgaagtattcccagaccgtcaaccttccagggaaa
ggttttggcctacagattacaccacttcctgctggtcacatgcttggcggcacaatctgg
aagatactgaaagatggggaggaggagattgtctatgctgttgactacaaccacaaaaaa
gaaagacatctgaatggttgtatcctggaggggaaatactttactcgcccacatcttatg
atcactgacgcctttaacgcaaactacaaccaatcacgacgcagggttcgagatgaacaa
ctaatgacaaccattctgcagacaatgagacgtgatggtaatgtcatggttgctgtggat
actgcaggaagaatgcttgaactcgctcagttactggaccagatctggagaaacactgaa
tcaggcctcaccacgtactctcttgcacttctcaacaatgtcagtttcaacgtcatcgag
tttgcaaagtcccaggtagaatggatgagtgataaaatcatgcgagcatttgaggatcac
aggaccaacccttaccacttcaagcacctcaaactgtgtcacaatctctctgagctggga
aaaataccagaaccaaaggtcgtgttatgcagccagcctgatttacagagtgggttttct
cgagatctttttgtggcgtggtgtgggaacccgaaaaacagcatcatactgactaatcgc
acgtcccctcgcacactagcacgctggctaatagatcacccggacaacaaaactgtcaca
atggaggtacgccggagaatccgtcttgaaggagctgagcttgaagaatttatgaagaaa
aaacatgaagcggaggaaaaagaaaagaaaaaagctgtccaagaaccggaggagtcgagc
gatgagagtgatgcggagatggaagtggatggtgcagtccccgccccgagcacttcccgc
gccaagcatgatatcatcatcaaacaagagggcaaaggtcgttcaggtttcttcaaacaa
gctaaaaagtcataccctatgttcccctacacagaggagaggatgaaatgggacgaatat
ggggaaatcatcagaccagaagactacatgatcagcgagacaactgtgtctgatgaaact
ctgtcgacggagaagcttgttgctgaatctgaccaacttcaagatgtatctgaagttcca
accaaatgcattgccgtgacggttacattagatatcaatgccagcatacagtacatcgat
tttgaaggccggacagatggagaatccatgaagaagatcctaagtcagattaagccaagg
cagctggttcttatccatggaagtgaggaggctacgtcatcgctggcggaatattgtcgc
actacctccggggttgtacagggatctgtcttcacgcctagcataggagaggtggtggac
gctactacagaaagtcatatctatcaggtgaagctgaaggactaccttgtgtccgcgctc
gagttctccaaggcgcgagatgctgagctcgcatggattgacggtatcatcaactttaca
gaaagccgactagatatcgaaactgatatacaagaagatgatgaggaagatgctaaactg
tccattgtaagaggacgagaaggcctcgaaaacgtgcccatcttggaggctgttccttct
aaccagatctcaggacacacagctgtgtttatcaacgagccgaaattgagcgactttaag
gtagtgctgttacaggaaggcattcaggctgagtttagtgcgggagcactggtttgtaac
gacaccatcgcagtcagaaggaacgaggctggacgtatgcaactggagggtgctatctca
cgtgactatttcaaagtgcgagatcttttgtataaacagtacgccattgtttga
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