Mya arenaria (softshell): 128208482
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Entry
128208482 CDS
T09995
Name
(RefSeq) intraflagellar transport protein 140 homolog
KO
K19672
intraflagellar transport protein 140
Organism
maea
Mya arenaria (softshell)
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
maea03037
]
128208482
Cilium and associated proteins [BR:
maea03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex A
128208482
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_IF140-IFT172
Beta-prop_IFT140_1st
Beta-prop_IFT140_2nd
TPR_IF140_C
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_HPS5
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR19_1st
ANAPC4_WD40
Beta-prop_EML
WDR55
WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
TPR_IFT80_172
Beta-prop_WDR35_TULP_N
TPR_COPA_B
WDR90_beta-prop_4th
PPR_2
EIF3I
TPR_GEMI5
VPS11_N
Consortin_N
NBCH_WD40
WDR54
Beta-prop_IFT122_1st
TPR_2
Motif
Other DBs
NCBI-GeneID:
128208482
NCBI-ProteinID:
XP_052768007
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Position
2:31703890..31746113
Genome browser
AA seq
1494 aa
AA seq
DB search
MAVYFDHRLDTERSGINTDVSWFSGNPLLAVTSYSDETGGSVNLFLDEGEKLLNVKLHRS
CAVTSTSWHPTKRIIAVGFENGELLIWNNADHELFEGLPLHKHAITVMHWSSNGSRLISG
DKSGVVMVWKADSKGRLQQNPLHQHHCQEPLAQVIFKPVPPPDPATDITQLAKAAVSGDE
SALDMFTWKKGKAAKSTTTFGAQESLSFFVGGATGGVYFVSETGSCNLAFKAESAILKLL
YYEEKNILVTVTEGLSLYQHAVMPEGETKEMMKVKLSGRGEKPVIDWAGKGILATSTGEG
VIRMWDLENEENYILHLDGHSGYDSNENITCLAFCDNKGVLAGGTNMGNVALWKFSPPPS
GKKVDGEIKWKLQTPATVEGPVQQVQWGSTKNLLAVNTIANVFMLSEHVMSAHFRDQTAV
VQFGPSSLSIEVFSNGTHHDLKTDIQVKGIFTTKDALAVWNGRRVIIYEYSEDKSTIKAS
GSFTTDSMVICLYEQNVYCIEMHKVQVRTFQGTVKQVINFSDVEGQPVCLDVCGSYLLIG
TDIGVLKVFDLSRREAKPHSHPKNLHELVPGFGSLQACKVNCNGTKVSAAIKMNANHQID
PKLYFWDIESDSLSYFNLESGKGEQDDYPPEQMLGMQSGSAIEMSDADRGKDQAAKDIAG
RFSTMHYWDAHDPKLVVCEAQILPRVTDKEEKKYKATLTKQIDEGPVEVMVVSLFCTPEN
GILIQDSFPLCDEYERMLGIEVPYHYFVRKGGSTEGDASAQEDGHLVRPDTATVIYPKLV
ARMTMRDFVGLEKSDKNTREAMLNFSYYLTIGNMDEAFKAIKLIKSESVWENMAKMCVKS
RRLDVASVCLGNMGHARGAKALRESLKEPELDAKVATLALQLGLFEDAERLLKNCKRYDL
LNHFYQSSGQWGKAMETAEMYDRIHLRTTYYNYAKYLEGKGELSEAIPNFEKSDTHRFEV
PRMLFDEPDALEQYILKHKDKSLHKWWAQYMESLGEMDTALQFYEMAQDYLSLVRVYCYC
GNMDKASEICNETGDRAGCYHLARQLENQDHIKEAIHFFQRAEAYGNAIRLCKEHNYDDQ
ILNLALLGRPGDMMEAARYYENVQGHQDKAVMLYHKAGNFSRALDLSFRTKQFGALQMIS
GDLDERADPELLKRCADFFLENGQYDKAVDLLGIGKKYWEALKICMDQHVEITEDLAEKL
TPSKEELGGDTMERIKILEAIAEVCMHQGQYHLATKKFTQAGNKMKAMKALLKSGDTEKI
IFFAGVSRQKEIYVMAANYLQSLDWRKDPEVMKNIIGFYTKGRALDSLAAFYDACAQVEI
DEYQNYDKALGALGEAFKCLGKAKMADEALQEERLAQLKNKITFIKKFVTARRVYDEDTE
EAIKQCQVLLEEPELDSGVRIGDVYGFIIEHYARKERWKAAYNAMEEMKGRVSGVNIAYY
VNMRTIQAVHQALDIPLSNTIDTSKMNGFRGGGGQEEEDGEIVEEEVPMYNDDL
NT seq
4485 nt
NT seq
+upstream
nt +downstream
nt
atggcggtctactttgaccaccgcctggacaccgagagatctggcatcaacactgatgtg
tcgtggttcagtggcaaccctctgttggcagtcacatcgtacagtgatgagactggaggc
tcagttaacctctttctggatgagggggagaaactgctcaatgtgaaactgcaccgaagc
tgcgcagtgacttcaacatcctggcacccaacgaaaagaattatagccgtggggtttgag
aatggagagctgttgatatggaataacgcggaccatgagctgtttgaaggtcttccacta
cacaaacacgccatcactgtgatgcactggagttctaatggctcgagacttatatctggt
gacaagtctggtgtagtgatggtatggaaggcggacagtaagggccgactacaacagaac
ccactacatcaacaccactgtcaggagcccctggcacaggtcatctttaagcctgtaccc
ccaccagaccctgctacagacataactcagcttgctaaggctgctgttagcggggatgag
tcagccctggatatgtttacctggaaaaagggcaaggcagctaagtctactacaaccttc
ggagctcaagagtctctctccttctttgtaggtggagccactggaggtgtatactttgtg
agtgagactggctcgtgtaacctggcatttaaggcagagagtgccattctcaagttgctc
tattacgaggagaagaacatccttgtaactgtgacagagggtctatccctctatcagcat
gctgtaatgcccgagggtgagacgaaggaaatgatgaaggtaaaactgagtgggcgtgga
gagaagccagtgattgactgggccggaaagggcattcttgcaacatctactggagagggt
gtcatcaggatgtgggacttggagaatgaagagaactacatcctgcatcttgacggccat
agtggctatgattccaacgaaaacattacctgcctagcattctgtgataacaaaggtgtt
ctggcaggaggtacaaacatgggcaatgtagctttgtggaagttctctcccccaccctca
ggaaagaaagtagatggggaaattaagtggaaactgcagactcccgccactgtggagggg
ccggtacagcaagttcagtggggttcgacaaagaaccttctggctgtcaacacgatagcc
aatgtgtttatgctgagtgagcatgtgatgagtgcccacttccgggaccagactgcagtg
gtccagtttggtccgagctcactgtccattgaagtcttttcgaatggaacccaccatgat
ttgaagacagacatacaagttaaaggaatattcacaactaaggatgcgcttgctgtgtgg
aacggtcgacgtgtgatcatatacgagtattcggaggacaagtcaactatcaaggcgtcc
ggaagtttcaccacagattccatggtgatctgcctatatgagcagaatgtctactgtatc
gagatgcacaaggtccaggtccgcactttccagggtactgtgaagcaggtgatcaacttc
agtgatgtagaaggtcagcctgtctgcctggatgtgtgtgggtcatacctgctcattggg
actgatattggtgttcttaaggtgttcgacttgtcaagaagagaggcaaagccccacagt
catcccaagaatctacatgagttggttcctgggtttggttccctgcaagcttgcaaagtc
aactgtaatggcacaaaagtcagtgcagccatcaaaatgaatgccaaccaccagattgac
ccaaagctatatttctgggacatagaatctgactccctctcatacttcaacttggaaagc
ggaaagggggaacaggacgattaccctccagaacagatgctgggaatgcagtcaggcagc
gctattgaaatgagcgatgcagacaggggcaaagaccaggcagcaaaggacatcgcagga
cgtttctccacaatgcattactgggacgcccatgacccgaaactggtagtgtgtgaagcc
cagatcctacctagggtgacggataaggaggagaagaaatataaggccactctgactaaa
cagatagatgagggaccggttgaggtgatggtggtgtcattgttctgtacgccggagaac
ggaatcctgatacaggacagttttccactgtgcgatgagtatgagagaatgttggggata
gaggtcccataccactactttgtcaggaagggtggttctacagaaggggatgcctcagct
caggaagacggccatcttgttcggccagacacggctacagtgatctacccaaaacttgtg
gcaagaatgaccatgcgtgactttgttgggctcgagaaaagtgacaaaaacacacgagag
gccatgctgaacttcagctattatctcaccattggaaatatggacgaggctttcaaggct
ataaaactgatcaaaagtgagtctgtctgggagaacatggcaaagatgtgtgtgaagtct
cggcgtctagatgtagccagtgtgtgtctcggaaacatgggccatgctcgcggggcaaag
gcgctgagggaatctctgaaagaaccagaacttgatgccaaagtggccaccctcgcttta
cagcttgggctgtttgaagatgctgagcgacttttgaagaactgtaagcgatatgacctg
ctcaaccatttttaccagtcttcaggccagtggggaaaggcaatggagacggcagagatg
tatgatcgaatccatctgcgcaccacatactacaactatgcgaaatacctggaaggcaag
ggagaactttctgaagccatacccaactttgagaaatcagacacccacagatttgaagta
cccaggatgttgtttgatgagccagacgccttggagcagtacatccttaaacacaaagac
aagtccttacacaagtggtgggcccaatacatggagagccttggagaaatggacacagcc
ttgcagttttacgagatggcccaggattatctctctcttgtcagggtctactgctactgt
ggaaatatggacaaggccagtgagatatgcaatgagacaggggaccgggctggctgctac
catctggccaggcaactggaaaatcaggaccatatcaaggaggccatacacttctttcag
agggctgaggcttatgggaatgccatacgcctttgtaaggagcacaattacgatgaccag
atcctgaatctagcattgcttggccgtcctggggacatgatggaagctgcgagatattac
gagaacgtacagggtcaccaggacaaggcagtcatgctctaccacaaggctggcaatttc
tcaagagcccttgacctgtcattccgaacgaagcagtttggagctctgcagatgatatca
ggagacttggatgagagggcagacccagagttactgaagcgctgtgctgacttcttcctg
gagaacggacagtatgataaggctgttgaccttctgggaatcggtaaaaagtactgggag
gccttgaaaatctgtatggaccagcacgtggagattacagaagacctcgcggagaaactc
actccgagtaaggaggagcttggcggagacactatggagcgtatcaagatcctcgaggcg
attgcagaggtctgcatgcaccaggggcagtatcacctcgctacgaagaaatttacacag
gctgggaataaaatgaaggccatgaaagcattactcaaatctggagacacagagaagatc
atattctttgccggcgtttctcgtcagaaggagatatacgtgatggcagccaactaccta
cagtcgttggattggagaaaagacccggaggtcatgaagaatatcattggattctatacc
aaaggcagggcactcgactccctggctgcgttctatgacgcctgtgctcaggttgaaata
gatgaataccagaattatgacaaagccttgggtgccctaggagaggcattcaaatgtctg
ggcaaggccaagatggctgacgaagccttacaagaggaaagactcgcacagctgaaaaac
aagatcacgtttataaagaagtttgtcactgctagacgtgtgtacgatgaggacacagag
gaagccatcaagcaatgccaggtgttactggaagagccggagctggacagtggagttagg
atcggagatgtgtacgggttcatcattgaacactatgccaggaaggagcgctggaaggct
gcatacaacgctatggaagagatgaagggacgtgtatcgggggtaaacatagcatactac
gttaacatgcggacaatacaagctgttcaccaggcattggatattcccctctcaaacacc
atagatacttcaaagatgaatggattccgtggcggaggcggccaggaagaggaagatggt
gaaatagtggaggaggaggtgcctatgtacaatgatgacttgtga
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