Mya arenaria (softshell): 128208488
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Entry
128208488 CDS
T09995
Name
(RefSeq) pinin-like
KO
K13114
pinin
Organism
maea
Mya arenaria (softshell)
Pathway
maea03013
Nucleocytoplasmic transport
maea03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128208488
03015 mRNA surveillance pathway
128208488
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maea03019
]
128208488
03041 Spliceosome [BR:
maea03041
]
128208488
Messenger RNA biogenesis [BR:
maea03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
128208488
Spliceosome [BR:
maea03041
]
Complex C
Other components
EJC/TREX
128208488
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_memA
Pinin_SDK_N
BAH
Motif
Other DBs
NCBI-GeneID:
128208488
NCBI-ProteinID:
XP_052768011
LinkDB
All DBs
Position
11:complement(34895779..34903672)
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AA seq
633 aa
AA seq
DB search
MAAVRGVNLLQSELEKAKEGLRGLDDNIRKLTGRDPDVPRPQGPARRVSVGNTSREFQPR
GEGNTRMAENRLFNIARRGIQPGDQRPRPSRGGAFARLGPMRRGRARGQDSGDEEDTRNR
PALQSSVVATTPREERSRTVSIEAQNKDSRGQARNRRMFGMILGTLQKFKDESKESKDKE
EQRVKIEKKLEEKFLQEKEEIIQERRELFLERRRKQVRIRTIEQKMEMVHNHENWERETK
KLQNFILTKAKPCLFYMPKILTEDSESKLEDTKSAVDAMIENRRKKLEEEINEMMSHVGG
DKDDEGEDDDDEDDEEEDDGSGEEESGGEEGVKRDGKENREKGAGEGVEEMEGVSVSERE
LRDKEREQRDRDRRMKEKQREERIRGRHVSKEEVVREDRSGGRGDRSGEREDKSGGRGEK
SGEREDRSGRRGDRSGEREDKSGGREDRSGGRGNRSGEREDRSGERIRSKSGEHREKPRE
RDRRHSRSRSRSKGKHRSGSRDRHRSGRREKRDRHRSEDGSKLRRRSKGEGSGKAEKTSK
VWEPMEDEEEEEFVGSKEQDPIKESGDSIQSRMLKIAGIERVPGILGKNDANERGKIGEN
EKQNMSAEIPRSIKTNSEDEQNFVDSEMSEAVK
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggtgcgtggtgtaaatctgctgcaaagcgagcttgaaaaagctaaggagggt
ttgagagggcttgatgataacatcagaaagctaacaggaagagatccagatgtaccaagg
ccgcagggaccagctcgtagagtctcagtggggaatacatcaagggaatttcaacccagg
ggagaaggcaacacaaggatggctgagaatcgcttattcaacattgcaagaagagggatt
caaccaggagaccagcgacccagaccaagtagaggaggagcctttgcaagactgggtcca
atgcgtcgaggtcgagcacgaggacaggacagcggggatgaggaggacaccagaaacaga
cccgctctccagtcatcagtggttgccactaccccccgggaagaacgttcaagaacagtc
tcaattgaggcacaaaataaggacagcagaggacaggccagaaacagaagaatgtttggc
atgatactaggaacgcttcagaagttcaaagatgagtcgaaagaatctaaagataaggaa
gaacagagggtcaagatagagaagaagctagaggagaaattcctgcaggagaaagaagag
ataattcaggagagaagagaactcttcctggagaggcggcgcaaacaagtccgcattcgt
accatcgaacagaagatggagatggttcataatcatgaaaactgggagcgagaaacgaag
aagttacagaactttatcctgactaaggccaaaccctgcttgttttacatgcccaaaatc
cttacagaagattcagaatctaaactggaggacaccaagtcagctgttgatgctatgata
gaaaaccgccgcaaaaaacttgaagaagagatcaatgagatgatgagccatgtgggaggt
gacaaagacgatgaaggggaagacgacgatgatgaagacgatgaggaggaggatgatggt
agtggagaggaggaaagtgggggagaggagggggtgaaaagagatgggaaggagaacagg
gagaaaggggctggagagggggtggaggagatggagggggtgagtgttagtgagcgtgaa
ttgagggataaagagagggagcaaagggatcgggacaggaggatgaaggagaaacaaagg
gaggaaaggatcaggggaaggcatgtgagtaaggaggaggtggtgagggaggataggagt
gggggaagaggggataggagtggggaaagggaggataagagtggagggaggggggaaaag
agtggggagagggaggataggagtgggaggagaggggataggagtggggaaagggaggat
aagagtggagggagggaggataggagtggggggagggggaatagaagtggggaaagggag
gacaggagtggagagaggattaggagcaagagtggggaacacagggagaaacctagagaa
agagataggagacattctaggtcgaggtctagaagtaagggaaaacataggtcggggagt
agagataggcataggtcaggcaggagagagaagagagatagacatcgtagtgaggatgga
tctaagttaagaagaaggtcaaagggggagggttctggtaaggctgagaaaacttcaaaa
gtgtgggaaccaatggaagatgaagaggaggaagagtttgtgggatccaaagagcaggac
cctatcaaagaatcaggtgatagtattcagagtcgaatgttaaaaattgcaggtattgaa
agagtgccaggaattttgggaaagaatgatgcgaatgagcgtgggaaaattggggagaat
gaaaaacagaatatgtccgctgaaatccctcgatcaataaaaaccaattctgaagatgag
caaaattttgtggactctgaaatgagcgaggctgtcaagtga
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