Mya arenaria (softshell): 128208977
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Entry
128208977 CDS
T09995
Name
(RefSeq) endoribonuclease Dicer-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
maea
Mya arenaria (softshell)
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
maea03036
]
128208977
Chromosome and associated proteins [BR:
maea03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
128208977
microRNA pathway
RISC loading complex
128208977
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Ribonuclease_3
Dicer_PBD
Ribonucleas_3_3
Dicer_dimer
PAZ
Helicase_C
dsrm
Importin_rep_6
Cas3-like_C_2
DSRM_2
HhH-GPD
Motif
Other DBs
NCBI-GeneID:
128208977
NCBI-ProteinID:
XP_052768714
LinkDB
All DBs
Position
11:26073737..26096883
Genome browser
AA seq
1968 aa
AA seq
DB search
MAYTRRIGGRPNPKRLPRHLRNEDIPRNIFTPKTYQVELLETALQQNTVVCMGSMSGRMF
IAVMMMKEKARQVRSSLENGGKRSIFLVHDDEVIDQVTPFIKHPCDLAVAACKEADGWTI
EQWKLLLDESQVLIIPCSVFLQLLSKKTISLDMINLLIFYDCNRVLTEAHPYQEIMQIYN
NFQKENCPRILGLTSNILEGRYQNPKLLDGLITSLEKALNSRAETASLVIPERYGIKPVE
RVIECPDYEDTTELNDQIYLLLENSIEFLEECNIEISEELDNRDPRLIPKAALIECHNIL
TQLGPWCAACLADMLVNQIEKIEKQKETVAMHKKFFKLGATTLRMVSKIFENHFKQCPYT
LEDLLKYSTPKVAALLECLRKYRPKTDFIIISEDLDMNAQKEDSDTDMSDDSDEFSENDD
DEDDDDDDDDDDESQSPNSRQIHFAIKKVNPEDELKAADPFALDEDKCLCGIVFVEHQHE
AFALSKFIEEACSWDEELCFVKSTHMTGNKSSAKRQKLYKKQEETLRKFRMQDLNLLIST
SVLEEGVDVPKCNFVARFDIPKSYRSYSHSKGRARSRDAEYVILIEEEHFDGFESELKQY
HEIEKVLINRNARLIEPEDEDQSDCSCDHMVPPFVPPSEERLGRCASMETAIMLVNRYCA
KLPSDAFTHLTPSCRIRELQSGEKTMYVASVRLPINSPVKMEIEGVPMPTKQKARQAVAV
QICKILHQRGELDNDLMPLGKEMLEGVGEGVDDPWADEEDAAGEARPGTTKRKQYYCKKV
ASALQQTVPSPGTPCNLYVITMILTGPITEDQNTRGRKIDAPDETTRSIGIITPKTIPLV
PMFPVFTRSGEVTVSVDLLSSEVTLSEEKLEKLKTFHRFLFSNVLRLEKDPMDYFPTESI
VGYVVVPLDVSGGSNLDIDWTYTDKVVESVNSTPKAHGEDYMFEFRAEDFEDAVVMPAYR
NIDQPQYFYVAEIRPDLNPLSPFPSPELYKTFAEYYASKYGLAISNLEQPLLDVDHTSAR
LNLLIPRYMNQKGVPLPTSSAETKKARRENLQQKQILIPELCDVHVFPASLWRKAVCLPA
ILYRLNYLLLGEEIRKHVAAETRIGVVELPEDYRFPKLDFGIDTSPENLKMLNGNSKDTD
ETDSTSDDGDKEEENLGSDIAKDDIPDDANEDENAMNEKSAKEEVDKSDENIDENKEESA
IDATRADDVPNCNKSIENISETFAKLCKTCDRDPCIEKCSKCNKSVCVDAGVAKFICDNV
NRKDANLTTFQENNLQFVYNINGATDDKNDGEADTAKEGDEMSLVNGDLKASETQDEQNR
TENGKLLQETRSDNINEVGDSGKKCFGNDDDEKENERSRYLSNGYVRHDNQTLEIADDLI
EEPSNKEVENGHENTNETEQTEDVFSNIATFLTDKEKRALDDDFCPEPLISLDIDMNLKE
FIGPSPCEILQALTMSNANDFYSLERLETIGDSFLKYAITVYLFCSYPGIHEGKLSYLRS
KQVSNFNLYRLGKRKGLAECMISTKFEPYENWLPPGYVINEDKRKGPVSRVHVVSLGQKS
LPSSFQTQLDCIDISLLSTTSSQTETEVDTFQSELDAIDLISKEKDEEEFAMEDKPTSLQ
NLLPYCLQLHHCLPDKSIADCVEALIGCYLTSCDKMAALKFMSWMGLKVLPKENMAADGY
DEDLRPVRLPPPASPMDGADRTACDLLTRLLDGYEGFEERIGYTFRDRSYLLQAFTHASY
HFNTITDCYQRLEFLGDAVLDYVITRHLYEDSDKYSPGVLTDLRSALVNNNIFAALAVKW
DFHKYFKAISPSLFHVIEKFVARQKEKEDEIDDEDEEADEDHEKEHVELEVPKALGDIFE
SVAGAVYLDSGMSLDTVWRVFYRIMKPQIDKYLQNIPKSPVRELLEQEPETAKFEKPERT
MAGKIRVTVNVVGKGVFTGVGRNYRIAKSAAAKKALRCIKTLENQGLI
NT seq
5907 nt
NT seq
+upstream
nt +downstream
nt
atggcatatacaagacggattggtgggagaccaaatccaaaaagactgccaagacatttg
agaaatgaagatattccaagaaacatctttactcctaaaacataccaggtggagttgctg
gagacggccctacagcaaaacacagtggtatgtatgggttcaatgtcaggccgtatgttc
atcgccgtcatgatgatgaaggagaaggctcgacaggtccgctcttcactggaaaatgga
ggaaaacgatccatcttccttgttcatgacgatgaagtgatagaccaagtaactcccttt
atcaagcatccctgtgatttagctgtcgctgcttgtaaggaagcagatggctggaccatc
gaacaatggaaacttctgctggatgaatctcaagtgctgattataccctgctcagtcttt
ctacagctgctgagcaagaaaaccatttccctggacatgatcaatttgctcatattttat
gattgtaatcgggtgttgactgaggctcatccttatcaagaaataatgcaaatttacaac
aatttccaaaaagaaaattgccccagaatactcggtttaacatcaaatattcttgaaggg
cgataccaaaatccaaaacttttagatggacttattacctcccttgagaaagctctcaac
tccagggcggagacagcctcactagtcattcccgaaagatacggcataaaaccagtggaa
agagtcattgaatgccctgactatgaggacactacagaactcaatgaccagatttacctg
ctgttagaaaattcaatagaatttctggaggagtgcaatatcgaaatatctgaggaatta
gacaatagagatccaagactgattccaaaagcagccttaattgagtgccataacattcta
actcaactcggtccatggtgtgcagcctgcttggcggacatgcttgttaatcaaatagaa
aagatagaaaagcagaaagaaactgtagctatgcataagaaatttttcaaacttggtgca
acaacactacgtatggtgtctaaaatctttgaaaatcactttaagcaatgtccatatacc
ttggaagacctcctgaagtacagcacaccaaaagttgctgcgcttttagaatgcttacgc
aaataccgtccaaagacagattttattatcatcagtgaagatctagatatgaacgcacaa
aaagaagacagtgacacagatatgtctgatgattctgatgagttttcagaaaatgatgac
gatgaggatgatgatgatgatgatgatgatgacgatgagtcacagtctccaaactccaga
cagattcattttgcaatcaaaaaggtaaatccggaagatgaattgaaggcagcagaccct
ttcgctttagacgaagacaaatgtctttgtggaatagtttttgttgagcatcaacatgaa
gccttcgcattgagcaaatttattgaagaagcttgcagctgggacgaagaactttgtttt
gttaaaagtactcatatgactggaaataagtcgtcggcaaaacggcaaaagttgtacaag
aaacaggaagaaacgttgcgcaagtttcgcatgcaagatttgaatcttctgatatccaca
agtgtattagaagaaggagtggatgtgcctaagtgtaactttgtggcacgattcgacatt
ccgaagtcctaccgttcttacagtcattcaaagggtagagcacgttccagggatgctgaa
tatgtgatactgattgaagaagagcactttgatgggtttgaatcggagctgaaacagtat
catgaaatagaaaaggttctgatcaatagaaatgctcgactgattgagcctgaagatgag
gaccaatcagattgcagctgtgatcacatggttccaccgtttgtaccaccatcagaggag
agattagggcgctgtgcctccatggaaacagctatcatgctagtcaatagatactgtgct
aaacttccaagtgatgcattcacccatctgaccccttcctgtaggattagagagctgcag
tcaggggagaaaacaatgtatgtggcgagtgtcagacttcctattaactcccctgtcaag
atggaaattgagggagttcccatgcctaccaaacaaaaagcccggcaagctgttgctgta
cagatctgtaaaattctgcatcaaagaggtgagttggacaacgacctgatgcctttgggt
aaggaaatgttggagggggtgggggagggggtcgatgatccctgggcagatgaagaggat
gcggcaggagaagcccgacctggcaccaccaaacgtaaacagtactattgcaagaaggtg
gctagtgctctacaacagacagtgccaagcccaggtactccctgcaacctgtatgtcatc
accatgatactcactgggccaattactgaagatcagaatacccgtggcaggaaaatcgat
gctccggatgaaactactcgctcaataggaatcataacgccaaaaactatacctctggtg
cccatgttcccagtttttaccagatcaggggaagtcactgtgtcagtcgacctgctgtca
agtgaagttactctgtcagaagagaagttggagaaactgaagacgttccaccggtttcta
ttctcaaacgtgctgagattggagaaagatccgatggattacttccccactgagagcatt
gttggatatgtggtcgtgccccttgatgtttcaggtggctcaaatttggacattgactgg
acatatactgacaaagtggtagaatcagtcaacagcactccaaaagcccatggagaagac
tacatgtttgagttccgagctgaagattttgaagatgctgttgtgatgcctgcgtacagg
aacatcgaccagccacagtacttttatgtggcagaaataagaccagatctcaacccactt
tcaccgtttccatcaccagaactgtacaagacatttgcagaatactatgcatccaaatat
ggccttgccatttcaaaccttgaacagcctttacttgacgtggatcacacatcggctaga
ctgaatctccttattcctcgctatatgaatcagaaaggagttccacttccaaccagcagt
gcagagacgaagaaagcaagaagggaaaatctgcaacaaaaacagatactgattcctgaa
ttatgtgatgttcatgtctttccagcttcactgtggcgaaaggctgtatgccttcctgcc
atcttgtacaggttgaattatctattgcttggggaggaaatcaggaagcatgttgctgcg
gaaactaggattggagttgtggagctgcctgaagattatagatttccaaagctggatttt
ggaatcgatacaagtcctgaaaatctgaagatgctgaatgggaattcaaaagacactgat
gaaactgactcaacatctgatgatggagataaagaggaagaaaatctagggtctgatatt
gctaaggatgatattccagatgatgcaaatgaagatgaaaatgccatgaatgaaaaaagt
gctaaagaagaggtggacaaaagtgatgaaaacattgatgaaaacaaagaagaaagtgct
attgatgctaccagggctgatgatgtgccaaattgtaataaaagcatagaaaacatatca
gaaacatttgcaaaactgtgcaagacttgtgatagggatccatgcattgaaaaatgttca
aagtgcaataaatctgtctgtgttgatgcaggcgtggccaaattcatctgtgataatgtc
aaccgcaaagatgccaacttgacaacattccaagagaataatttgcaatttgtttataat
atcaatggtgcaactgatgacaaaaatgatggtgaagcagatacagcaaaagaaggggat
gaaatgtcactggtgaacggtgatttaaaagctagtgaaactcaagatgaacaaaacagg
acagaaaatgggaaacttcttcaagaaactaggtcagacaatataaatgaggtaggagat
agtggtaaaaaatgttttggaaatgatgatgatgaaaaagaaaatgaaaggagtaggtac
ttaagtaatggttacgtgcgtcatgataaccaaacattagaaatcgctgatgacttgatt
gaagaacccagcaataaagaagtagaaaatggccatgaaaatacaaatgagaccgaacaa
actgaagatgtattttcaaatatagcaaccttcttaactgataaagagaaaagagcttta
gacgatgacttttgtcccgagcctctcatttctcttgacattgacatgaatcttaaagaa
ttcattggtccaagtccatgtgagatcttgcaagcactgacgatgtctaacgctaatgac
ttctacagcttggaaagactggaaaccattggagattcattcctgaagtatgccatcaca
gtttatctgttttgttcctatcctggaatacatgagggaaaactgagctatctgcgcagc
aagcaagtcagtaatttcaacttgtacaggcttggaaaacgcaaaggacttgcagagtgt
atgatttccaccaagtttgagccctatgaaaattggttgcctccaggctatgtgattaat
gaagataagagaaaaggtccggtgtccagagttcatgttgtatctttaggccaaaagagt
ttgccatctagtttccaaacacagctcgactgtattgacatttcacttctgtccacaaca
tctagtcaaacagagacagaagtggacactttccaatcagaacttgatgcaattgacctc
atctcaaaagagaaagatgaggaagagtttgccatggaagataaacctactagcctacaa
aatcttctgccttactgtctgcaacttcaccactgtctccctgacaagagcatagcggac
tgtgtggaggctctgattggctgttacttgacgtcatgtgacaagatggctgctctcaag
tttatgtcctggatggggctcaaggttttaccaaaagaaaacatggccgctgatggctac
gatgaggatttgcgaccagtgcgtttgccacctccagcctccccaatggatggtgctgac
cggacagcctgcgatcttctgactaggttactagacggttatgaggggtttgaggaaagg
ataggatacacattcagggacaggtcctacctgcttcaggcctttacacatgcatcctac
cacttcaataccatcactgactgctatcagagacttgaatttctgggggacgcggttctt
gactacgttattacccgccacctttacgaggactccgacaagtacagcccaggcgtcctc
actgacctacgttcagccctggtcaacaacaatatcttcgcagcccttgcagtcaagtgg
gactttcacaaatatttcaaggcgatctcgccttcactgttccacgtaattgagaagttt
gtggcacgacagaaggagaaagaagatgaaatagatgatgaggatgaagaggctgacgag
gaccatgagaaagaacatgttgagttggaagttccaaaagcgctcggagatatatttgag
tcggtggcaggggcagtgtaccttgacagcggtatgtctcttgacaccgtctggcgtgta
ttctacaggatcatgaaacctcagatagataaatacctgcagaacatccccaagtctcca
gtgagagagttgttggaacaggaaccagagacagccaagtttgaaaagcctgagcgcacc
atggctggaaagatccgcgtgacagtgaacgttgttgggaagggtgtatttacaggagtg
ggtcgaaattatcgcatcgccaagagtgctgctgccaagaaggccttgcgttgtataaag
acgcttgaaaatcaaggccttatataa
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integrated database retrieval system
