Mya arenaria (softshell): 128211312
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Entry
128211312 CDS
T09995
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
maea
Mya arenaria (softshell)
Pathway
maea03020
RNA polymerase
maea03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
128211312
09124 Replication and repair
03420 Nucleotide excision repair
128211312
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
maea03021
]
128211312
03400 DNA repair and recombination proteins [BR:
maea03400
]
128211312
Enzymes [BR:
maea01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
128211312
Transcription machinery [BR:
maea03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
128211312
DNA repair and recombination proteins [BR:
maea03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
128211312
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
128211312
NCBI-ProteinID:
XP_052771926
LinkDB
All DBs
Position
12:25341077..25366377
Genome browser
AA seq
1177 aa
AA seq
DB search
MMYGQEDEMVYEAEDESDEITTDLWQEACWIVISAYFDEKGLVRQQLDSFDEFIQMSVQR
IVEDTPQIELIAEAQHKAGVVESPPQYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRN
LTYSAPLYVDITKTVVKPDEDPVETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNEC
PLDPGGYFIINGSEKVLIAQEKMATNTVYVFRQKDSKYAFKTEIRSCLEHSSRPTSTLWV
NMMARGGQGAKKSAIGQRIISILPYIKQEIPIIVVFRALGFVSDRDILEHIIYDFDDPEM
MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFC
ETKKAYFLGYMVHRLLLAALGRREEDDRDHYGNKRLDLAGPLLAFLFRGLFRNLMKEVRM
YAQKFIDRGKDFNLELAIKTRIITDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS
TLSHLRRLNSPIGRDGKLARPRQLHNTQWGMICPAETPEGGAVGLVKNLALMSYISVGSQ
PSPILEFLEEWSMENLEEVAPSSIADATKIFVNGCWVGIHRDADQLMSTLRKLRREMDII
VSEVSMIRDIRDREIRIYTDAGRICRPLLIVENQKLLLKQSHIKQLKQREYNNYSWQDLV
ASGVVEYIDPLEEESIMLAMTPNELNNEEVQYCSTYTHCEVHPAMILGVCASIIPFPDHN
QSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHGLLYPQKPLVTTRSMEYLRFRELPAGIN
SIVAIATYSGYNQEDSVILNQSAVERGYFRSFFFRSYKDSESKKGLDQEEIFEKPTRETV
QGMRPAIYDKLDEDGIIAPGVRVSGDDVLIGKTLTLPKNEDELEGSAQRFSKRDASVFMR
RSETGIIDQVMVTINQEGYKFCKIRVRTVKTPQIGDKFASRHGQKGTCGITYRQEDMPFT
CEGITPDIIINPHAIPSRMTVGHLIECLQGKVAANKGEIGDATPFNDSVNVQKISNLLHK
YGYQQRGNEVLYNGFTGRKLNAQVFLGPTYYQRLKHMVDDKIHSRARGPLQILNRQPMEG
RARDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYRVHLCNICGLIAIANLRNQTFEC
RGCKNKTQVSQIRIPYACKLLFQELMSMSIAPRIMVI
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgatgtatggtcaagaagatgagatggtgtatgaggcggaggatgaaagtgatgagatc
actacggacttgtggcaggaggcctgctggatcgtcatctctgcatacttcgatgaaaag
ggtctcgtcaggcagcagctagattcgtttgacgagtttattcagatgtccgtacagagg
attgtggaggatacgccacagattgaactgatagctgaggcccaacacaaagctggtgtt
gttgaatcaccgccccaatacctgttgaagtttgagcagatctatctgtccaagcctact
cactgggaaaaggatggagcgcccagtcccatgatgccgaatgaggctagactgaggaat
ctcacgtattctgcccctctgtatgtggacatcaccaagacagttgtgaagccagatgaa
gaccctgtggagacccagcaccagaaaactttcattggcaagatccctatcatgctgcgg
tccacctactgcctgctcagtggactaacagatcgtgacttgacagagttgaatgaatgt
cccctcgaccccggcggatatttcatcatcaatggctcagagaaagtgcttattgcccag
gaaaagatggccaccaatactgtgtatgtgttcaggcagaaagactccaagtatgccttc
aagacagagatccgttcctgcctggaacactcgtcacgtcccaccagtacattgtgggtc
aacatgatggccagaggcgggcagggagccaagaagagtgctattggtcagcgtatcatt
tccatcctaccatatatcaagcaagaaattcccatcattgtggtattccgagcccttggc
ttcgtgtcagatcgagacatcttggaacatatcatctacgactttgacgaccctgagatg
atggaaatggtgaaaccctcgttggacgaagcatttgtgatacaagaacagaacgtggcg
ttgaactttatcggagctcgtggagcacgacctggtgttaccaaggagaagagaatcaag
tacgctcgtgaaattctacagaaggagatgttacctcatgtgggtgtcagcgacttctgt
gagacgaaaaaggcatacttccttgggtacatggtccatcgattgctgctggctgccctg
ggaaggagggaggaagatgacagagatcactacggcaataagaggctggacctcgctgga
cctctactggccttcctctttagggggttgttccgtaacctgatgaaagaggtgcggatg
tacgcacaaaagttcattgaccgcggaaaggacttcaacctcgaactagccattaaaaca
aggattatcacagacggcctgaagtactctcttgccacaggcaactggggagaccagaag
aaagctcaccaggcccgggctggcgtatcacaggtgttgaacaggctcacatttgcttct
acattgtctcacttgcggcgactcaactccccgattggacgtgacggtaagctggccaga
ccccgacagctccacaacacacagtggggcatgatatgtcctgctgagacaccagaggga
ggtgctgttggcctggtgaagaaccttgccctcatgtcctacatctcagtgggatcccag
ccatcccccatcctggagttcctggaggagtggagcatggaaaacctggaggaggtggca
ccctcgtccatagcagatgcgacgaagatctttgtgaatgggtgctgggttggcatccac
agagatgcggaccagctcatgtcaacgctgagaaaactccgtagagagatggacatcatt
gtatcggaggtatcgatgattcgggatatacgtgaccgagaaatccgtatctacactgac
gcgggccgtatctgccgacccctgcttatcgtggagaaccagaaacttcttcttaaacag
agccatattaaacagcttaaacagagggaatataacaactacagttggcaggatctggtc
gctagcggagtggttgagtatatcgaccccctggaggaggagtccatcatgttagccatg
acccccaacgagctgaacaatgaggaggtgcagtactgctccacatacacgcactgtgag
gtccaccctgccatgattctgggtgtctgtgcttccatcataccattccctgatcacaac
cagtctcctcgtaacacataccagtctgctatgggtaagcaggccatgggcgtgtacatc
actaatttccacgtgcgtatggacaccctggctcatggactcctgtacccccagaaaccc
ctcgtcaccacacgatccatggagtatctacgtttccgggaactgcccgctggaatcaac
tccattgtggccattgctacatactccggctacaaccaggaagattctgtcatcctgaat
cagtctgctgttgagagaggatacttcaggtcgtttttcttccgttcatacaaggattca
gagtcgaagaaaggtctggaccaggaggagatatttgagaaaccaacaagggaaactgtg
caaggaatgcgacctgctatctatgacaagctggatgaagatggtattatagcccctggg
gtgagagtgtccggagacgatgtcctgatcgggaaaactcttacacttccgaagaatgag
gacgagctggagggctcagcacagagattttccaagagagatgccagtgtgttcatgaga
cgcagtgagacgggaatcattgaccaggtgatggtgacaatcaaccaagaaggttacaag
ttttgtaagattcgtgtgcgtactgtgaagacgccgcagattggggacaagtttgcctcc
agacacggacagaaaggaacctgtggcatcacgtacaggcaggaggacatgccgttcaca
tgcgagggaatcaccccggacatcatcatcaacccccacgccatcccgtcaagaatgaca
gtgggtcatttgattgagtgtctccaggggaaagtggccgctaacaagggcgagatcgga
gatgccacacccttcaatgattccgtcaatgtacaaaagatctcaaacctcttacacaag
tatggttaccagcagagaggcaatgaggtgctttataacggttttaccggtcgtaagcta
aatgcccaggtattccttggacccacatactaccagcgtctcaagcatatggtggatgac
aagatccactcgcgggcacgtgggccacttcagatcctgaacaggcagcccatggaggga
agagccagggatggtgggctgcgttttggagagatggagcgtgattgtcagattgcccac
ggagcggcacagtttctccgggagcgactgttcgaggcatcagacccatacagagtgcac
ctgtgtaacatctgcggcctcatcgctatcgcaaatctccgtaaccagacctttgagtgc
cgtggatgcaagaataagactcaggtgtctcagatccgtatcccatacgcctgcaagctg
ctgttccaggaactcatgtcaatgagcatcgcacccaggatcatggtcatctga
DBGET
integrated database retrieval system
