Mya arenaria (softshell): 128211543
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Entry
128211543 CDS
T09995
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
maea
Mya arenaria (softshell)
Pathway
maea03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128211543
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
maea03041
]
128211543
Enzymes [BR:
maea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128211543
Spliceosome [BR:
maea03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
128211543
Complex C
U5 SnRNP specific factors
128211543
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
SWI2_SNF2
PhoH
Motif
Other DBs
NCBI-GeneID:
128211543
NCBI-ProteinID:
XP_052772414
LinkDB
All DBs
Position
12:complement(59097715..59126878)
Genome browser
AA seq
2146 aa
AA seq
DB search
MADAAARSLQYEYKSNSNLVLQADRSLIDRRARDEPTSEVQSLTGKFSGSKMGDKAQRTR
PPQMEERKAKRHKRDEAQRDMLKMKGTTLLTEGISDLVGIMYRPKTPETRGTYEVLLSFI
QAAIGDQPRDILCGAADEVLTVLKNDKMREKEKKREVEGLLGGLAEERFALLVNLGKKIT
DWVQEEKMQIEENIDETYGVNVQIEESDEDDDADVYGEVREEDEVSDEESGGEEAYHSGT
LSTGNLGGGERSSKGDSGLHPRDIDAFWLQRNLSKYYPDDPTMAQAKSKEVLTILKASGD
DREAENQLVMLLGVDAFAFIKILRQFRRMILYCTLLAQAQNETEKGEIEGKMESESDLKT
ILHALQATEKEDIVTEERSRRDQARKSRVAADIEAMDTDDAQELGYVNSLDLEDISFQHG
SHLMANKKCQLPDGSFRKQRKGYEEVHVPALKPQPFDADESLVKIGHLPNYAQPAFEGFK
SLNRIQSRLFKATMESDQNILLCAPTGAGKTNVALLTMLREIGKHVNPDGTINKDEFKII
YVAPMKSLVQEMVGNFRNRLKSYGLNVEELTGDSQVTKEQINATQIIVCTPEKWDIITRK
GGERTYTQLVRLMIFDEVHLLHDERGPVLESLVARTIRNIETTQEDVRLVGLSATLPNYE
DVATFLRVEPSEGLFFFDNSFRPVPLEQQFIGITEKKPVKRFQIMNEIVYEKVMEHAGKN
QVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLKEGSMSTEILRNESEKVNNLELKDLLP
YGFAIHHAGMNRLDRTLVEDLFADRHIQVLVSTSTLAWGVNLPAHTVIIKGTQIYSPEKG
RWVELSALDVMQMLGRAGRPQYDTKGEGIMLTNHSELQYYLSLMNQQLPIESQFIGKLAD
NLNAEVVLGTVQNVKEAVDWLGYTYLYIRMLRHPTLYGVSHDQMKEDPLLQQRRKDLIHS
AAMLLDKHNLIKYDKKSGHFQVTELGRIASHYYLTHETIATYNQLLKPTLSEIELFRVFS
LSSEFKYIAVREEEKLELLKLLERVPIPIKESIEEPSAKVNVLLQAYISQLKLEGFALMS
DMVYVTQSAARLIRAIFEIVLHRGWAQLTDKCLALCKMVQKRMWQSMTPLRQFKKVQGHE
EVVKRIEKKNLPFERLYDLNHNEIGELIKMPKFGKTIHKYIHQFPKLELAVHILPITRST
LRIELTITPDFQWEDKVHGTSEAFWILVEDVDSEVILHHEYFLLKDKFAQDEHYVKFFVP
VFEPLPPQYFIRVISDRWIGSETLLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNPNF
ESLYSDKFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAVLRMFSQNADGRCV
FVTPLEPLAQQMYTDWYNKFGLQLGKRVVVLTGETGTDLKLLAKGNIIISTPEKWDVLSR
RWKQRKNVQNINLFIVDELHLIGGDVGPVLEVICSRMRYISSQLERNIRIVALTSSLSNA
KDVSQWLGVSTTGFFNFHPNVRPVPLEMHIQGFNISHNMSRIIAMAKPTYQAILRHAPKK
PVIVFVPSRKQTRLTAIDILTFSAAEIQTESETPRSRFLHVPEEDIAPFLEKIQDKTLKE
TLSNGVAYLHEGLNELERKVVEQLFSTGAVQVLVASRSLAWGMNVAAHLVIVMDTQYYDG
KTHSYEDYPVPDVLQMIGRANRPLTDNEGKGVILCQSSKKEFFKKFLYEPLPVESHLDHC
LHDHFSAEIVTKTIENKQEAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVEN
TISDLEQSKCISVEDEMYVSPLNLGMIAAYYYINYTTIELFSMSLNAKTKVKGLIEIISN
AAEYEEIPIRHHEDSVLRQLASRLPNKLANPKYNDPHVKTNLLLQAHLSRMQLSAELQSD
TEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWGKDSYLKQLPHFTADII
KRCQEKGVETIFDVMEMEDDDRNELLQLSDSQMADVARFSNRYPNIEMTYEVADKDSVSS
GSTVNVHVQLEREDEVTGPVVAPLFPQKREEGWWVVIGDTKNNSLLSIKRLTLQQKAKLK
LDYVAPAPGKYNYTLFYMSDAYMGCDQEYKFSIDVKEADSSDSDSD
NT seq
6441 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgcagcggcaagatcgttgcagtatgagtacaaatcgaactccaatcttgtg
ttgcaagcagatcgatccttgattgacagaagggcacgagatgaacccacaagtgaggtg
cagtcccttactgggaagttctcggggagcaaaatgggcgataaagcacagagaactaga
ccccctcagatggaggaaagaaaagcaaagagacacaagcgagacgaagcccagagagac
atgttaaagatgaagggaaccacacttcttacagagggtatatcagacctggtcggtata
atgtacaggcctaaaaccccagaaacaagaggcacttatgaggtcctactcagtttcata
caggctgcaattggcgatcagcctcgggatatcctatgtggtgcagcagatgaggtgctg
actgttttgaagaacgacaaaatgcgtgaaaaggagaagaaacgagaagtagagggcctg
ctgggaggccttgctgaggaaaggttcgccctgcttgtcaacctcgggaagaaaatcaca
gactgggtacaggaggagaaaatgcagatagaggaaaatattgatgagacctatggagtt
aatgtgcaaattgaagagtcagatgaagatgatgatgcagatgtgtacggtgaggtgcgt
gaggaagatgaagtgtccgatgaggaatcaggtggagaggaggcctatcacagtggaacg
ttgtcaactggtaatcttggaggtggtgaacgtagtagtaagggagactcagggctgcac
cctcgagacattgatgccttctggcttcagcgtaacctaagtaaatactatcctgatgat
cccaccatggctcaagcaaaatccaaggaggttctaactattctaaaggcctcaggagat
gaccgtgaagcagaaaaccagcttgtaatgttgctgggtgtagatgcctttgctttcatc
aagattctccgccagttcagacgcatgatcctatactgcacactactcgcacaagcacag
aatgagacggagaaaggggagattgagggaaaaatggaaagtgagtcagacctgaagacg
atactgcacgcccttcaggcgacggagaaagaagatattgtgacggaggaacggtcccga
cgagaccaggcccggaaatctcgagtagctgcagatattgaggcaatggatacagatgat
gctcaggagctgggctatgtaaacagcctggaccttgaagacattagtttccaacatgga
agtcatctgatggcaaacaagaaatgccagcttcctgatggctcgttccgcaaacagaga
aaaggttacgaggaggtccatgtccctgcgctaaaacctcagccattcgatgctgatgag
tctcttgtgaaaataggccaccttccaaactatgcccagccagcatttgagggatttaag
tctctcaatcgaatccaaagtcgacttttcaaggcaacaatggaatctgaccagaatatt
ctgttgtgtgctcccactggtgcgggaaagacaaatgttgcattgttgacaatgctacgt
gagatcggaaagcatgtaaatcctgatgggaccataaacaaggatgagtttaagatcatc
tatgtggcaccaatgaaatcacttgtgcaggagatggtgggaaactttaggaataggctc
aagtcctatggtttgaatgttgaggagttgacgggcgattctcaagtaacgaaggaacag
ataaacgcaacccagatcattgtttgtacaccagaaaagtgggacattatcacacgcaag
ggtggcgagaggacatacacacagctagtgaggctcatgatctttgacgaagtacacctg
cttcacgatgagagaggtccggtgttggagtcccttgtagccagaactattcgcaacatt
gaaaccacacaagaagatgtgagactggtgggactgagcgctactcttccaaactacgag
gacgtcgctactttccttcgtgtcgaaccatcggaggggctgtttttctttgacaacagt
ttccgtcccgtaccgctagagcagcagtttattgggataacagagaaaaagccggtgaag
aggttccaaattatgaacgagatcgtgtatgaaaaagtgatggagcatgctgggaaaaac
caggtgctggtgtttgtccactctcgtaaggagactggtaagacagctcgtgccatcaga
gacatgtgtttggagaaggataccctgggactgttcctgaaggaggggtcaatgtcaaca
gagattctccgtaatgaatcggagaaggttaacaacctggaactcaaggatctcctgcct
tatggatttgctatccatcatgctggcatgaacagacttgatcgtacccttgtggaggat
ctatttgctgatcgtcacatccaggtgctggtatccacctcgaccctagcctggggtgtc
aacctccccgcccacaccgtcatcatcaaaggcacacagatatacagccctgagaaggga
cgatgggttgaactttcagctcttgatgtcatgcagatgttgggtcgtgcaggccgtccc
caatatgacaccaaaggtgaaggcatcatgctgaccaatcacagtgaactacagtactat
ctgtctttgatgaaccaacagctgcccattgagagccagtttatcggcaagttggcagat
aatctcaatgccgaggttgtgctgggaaccgtgcagaatgtgaaggaggcagtcgactgg
ctaggttacacctacctgtacatccgtatgttacgtcacccgacactgtacggggtgagt
cacgaccagatgaaggaggatccgctactacagcagcgacgcaaggacctcatacactcc
gcggccatgctgcttgataaacacaacctgatcaagtatgacaagaagtccggacatttc
caggtaacggagcttggccgtattgcgagtcactactacctgacccacgagacaattgcc
acatacaaccaattgctgaaaccaacactgagtgagatagaactgttcagagttttctcc
ttgtcctcggagttcaaatacatcgctgtcagagaggaagaaaagcttgagctactgaag
ttactggagcgagttccaataccaatcaaagaaagcattgaagaaccaagtgcgaaggtc
aacgttcttctacaagcctacatatcccagctgaagcttgaggggttcgctctcatgtct
gacatggtctacgtcacacagagcgcagctcggcttattcgggccatatttgagatcgtt
ctgcacagaggctgggctcaactcacagacaagtgtctggccctgtgtaagatggtgcag
aaaagaatgtggcagtccatgacaccgcttcgtcagttcaagaaggttcaaggtcacgag
gaggttgtgaagcgtattgagaagaaaaaccttccattcgagcgtctttacgacctgaac
cacaacgagataggagagctaatcaagatgcctaagtttggcaagacgatacacaagtac
atccatcagttcccgaaactggagcttgcagtgcacattctgcccattaccaggtcgaca
ctgcgtatagagctaacaatcacacccgactttcagtgggaggataaagtacacggcacg
tcagaggcattctggatcctcgtagaagatgtcgacagtgaggttatactccaccatgag
tacttcctgctcaaagacaaatttgcccaggatgagcactacgtgaagttctttgttcct
gtgtttgagcccctgcctccacagtacttcatccgggttatctctgacaggtggattggc
tctgagacgctcctgcccgtctcattccgtcacttgatccttcctgagaaatacccacca
ccgacggaactgcttgacctccagcccctccccgtgtctgccttgcgaaacccgaacttt
gagtccctctacagcgacaagtttccattcttcaatcccatacagacacaagtgttcaat
gcagtgtacaacagtgatgacaatgtgtttgtgggggcacccactggtagtggaaagaca
atctgtgctgagtttgccgtgctcagaatgttctctcagaatgcagacggacggtgtgtg
tttgtgacacctctggaaccccttgcacaacagatgtatactgactggtacaacaagttt
ggtctacagctggggaagagagttgtcgtccttactggagagactgggacagacctgaaa
ctgctggctaagggcaacattatcatcagcacaccagagaagtgggacgtgttatctcgc
cgttggaagcagagaaagaacgtccagaacatcaaccttttcattgtggacgagcttcat
ctcattggtggcgatgtggggccggtactggaggtgatatgttcccgtatgcggtacatc
tcatcccaactggagcgtaacatacgtattgtggcgttgacctcatctctcagtaacgcg
aaggacgtctcccagtggctcggcgtatcgactacaggatttttcaactttcatcccaat
gtcaggcctgtgcctcttgaaatgcacattcagggcttcaacatcagtcacaacatgtct
cgcatcatcgccatggccaagcccacataccaggccatactgagacacgcccccaagaag
ccagtgatcgtgtttgtcccatcccgcaaacagacgcgcctaacagccatcgatatcctg
acattctctgcagcagagatacagacagagtctgagactccgcgaagtcgcttcctccac
gtgcctgaagaggatatagcgcctttcttggagaagatccaggacaagactcttaaagaa
acacttagcaatggcgtagcatatctccatgagggattgaatgagctggaacgtaaagtg
gtcgagcagctgttttctacaggggcagtgcaggtgcttgtagcatcacgcagtcttgcg
tgggggatgaatgtggctgcacacctcgtcattgtcatggatacacagtattacgatggc
aaaactcactcgtacgaggactacccagttcctgatgtgctccagatgattggtcgagcc
aacaggcccctcactgacaatgaaggaaagggtgtgatcctatgtcagagctcgaagaag
gagttcttcaagaaattcctgtacgagccgctgccagttgagagccacttggaccattgt
cttcacgaccacttcagtgcggaaattgttacaaagacaatagaaaacaaacaggaggct
gtcgactatctgacatggacattcctctatagacgaatgacgcagaatcccaactactac
aacctacagggcatgtcacacaggcatttgtctgatcatctctctgagcttgtggaaaat
actatttcagatttggagcagtcaaagtgtatcagcgttgaagatgagatgtacgtttct
cctctcaacctgggaatgatcgctgcctactactacatcaactataccaccattgagtta
ttcagcatgtccttgaacgcgaagacaaaggtcaagggtctcattgagattatctcaaat
gccgcggagtacgaagaaatccccatacgtcaccacgaggattccgtgctccgtcaactg
gcatcacgtctgccgaacaaactggcgaacccgaaatataacgatccacacgtgaagaca
aacctgttactgcaagctcacttgtcccgtatgcagctgtctgcagagctgcaatctgac
accgaggagattctgagcaaggcgatccgtctgattcaagcgtgtgttgacgttcttagc
agtaatggatggctaagccctgcgctggcagctatggagttagcccagatggttacacaa
gccatgtggggaaaagattcttacctgaaacaacttccacacttcacagcggacatcatc
aagcgatgccaagaaaagggtgtggagacgatatttgacgtcatggagatggaagacgat
gatcgtaatgagttgctgcagttgagcgactcacagatggcagatgtcgctcgattctct
aatcgatatccaaacatcgagatgacctacgaagtcgctgacaaggacagtgttagcagt
ggttctacagtgaatgtgcacgtgcagttggagagggaggatgaggtcacgggacctgtt
gttgctccacttttcccacagaaacgtgaggagggctggtgggtcgtcattggagacaca
aagaacaactccctgctctccatcaagcgtctcacgctgcaacagaaggccaagctgaag
ctggactatgtggcccccgcccccgggaagtacaactacaccctcttctacatgagcgac
gcctacatgggctgtgatcaggaatacaagttctctattgacgtgaaggaagcagatagt
agtgacagtgactcagactaa
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integrated database retrieval system
