Mya arenaria (softshell): 128211649
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Entry
128211649 CDS
T09995
Name
(RefSeq) DNA polymerase lambda-like
KO
K03512
DNA polymerase lambda [EC:
2.7.7.7
4.2.99.-]
Organism
maea
Mya arenaria (softshell)
Pathway
maea03410
Base excision repair
maea03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
128211649
03450 Non-homologous end-joining
128211649
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
maea03400
]
128211649
Enzymes [BR:
maea01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
128211649
DNA repair and recombination proteins [BR:
maea03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
128211649
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
128211649
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
DNA_pol_lambd_f
DNA_pol_B_thumb
HHH_8
BRCT
NTP_transf_2
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
Motif
Other DBs
NCBI-GeneID:
128211649
NCBI-ProteinID:
XP_052772608
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All DBs
Position
12:30616096..30694135
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AA seq
561 aa
AA seq
DB search
MDRRRKRTGDDKSPTVSKKRTLPDSVSSDKSLNCLATVKAFILPAGIEKMRLQIFETQLK
KYGGTVLKLYDNQATHLIVDDKMEPNRLCRILKIASPPTRVKIVKSSWLSACFKRKELLC
FDDYRLDCSTYIKSKEPDLSFAKEKATAASNSESTVGGNVKTKNMLPKAGFMFGHHSKNN
IPASADDDDSDYCPSDGEGKPGDPSSGNNEFAVSPQKELPVGNWVCAQSSKTPVENQNKH
ITDILEEMVKTYESTNDKWRAFGYQKAIQVLRKHPKPIKSFEEAMNLPSIGKRLAEKIWE
IAESGELRKLKELRSSEELKVIETFQNVWGAGAHTARTWYQQGLRTLDDVREQGNLTHQQ
QVGLHCYNDFLDRMPRAEAAEIEQVVCEAAKSLQEGVIAQACGSFRRGKATCGDVDVLVT
HPDGKSHKGLFGKLLAKLKELGFLTDDLVTAEDNGNQKKYLGVCKLPGEGRKHRRLDLIV
VPYDEYACALVYFTGSAHLNRSLRHLAKKMNMSLSEHSLNVGVVRRGSEKIYEGTPVPTP
TEESVFVKLGVPYRPPEERDH
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atggacagaagacgaaaaagaacaggtgatgataaatcaccaacagtatcaaagaaaaga
accttaccagattctgtcagttcagacaaatctctaaactgtcttgccacagtgaaggca
tttattctgccagcaggtattgagaaaatgaggttgcaaatctttgaaacccaactaaag
aaatatggtggaacagtgcttaaattgtatgataatcaggcaactcatttaattgttgat
gataaaatggaaccaaacagattgtgtagaattttgaaaattgcctcacctccaactcgt
gtgaaaattgtaaaatccagttggctcagtgcttgttttaaacgcaaagaacttctttgt
tttgacgactacagacttgattgttcaacatacataaaaagtaaagagcctgacctaagt
tttgcaaaagaaaaagctactgcagcatcaaactctgaaagtactgttggaggaaatgtt
aaaaccaagaacatgttgccaaaagctggtttcatgtttggtcaccatagtaaaaataac
atacctgcttccgctgacgatgatgacagtgactactgtcctagtgatggggaagggaag
ccaggggacccgtcctctgggaataatgaatttgcagtctcaccacagaaagagttaccc
gttgggaattgggtctgtgcacagtcctcaaaaacacctgtggaaaatcaaaataaacac
atcactgacatactagaggagatggtgaaaacttacgaatcaaccaatgacaagtggagg
gcctttggataccagaaagccatacaagtacttagaaagcacccaaaacctatcaaatcg
tttgaggaagccatgaatctccccagcattggcaagcggttagcagagaagatttgggag
attgcagaaagcggtgaattacgcaagttgaaggagctgagatctagcgaagagcttaag
gttatagagaccttccagaatgtgtggggagctggggcacatacagcccggacctggtac
caacagggcctacggacacttgatgatgtgagggaacaagggaatcttactcatcaacag
caggttgggctgcattgctataatgacttccttgatagaatgccaagagcagaggcggca
gagatcgaacaagttgtgtgtgaagctgccaaaagccttcaggaaggtgtcattgcacaa
gcatgcggctcgttccggcgcgggaaagccacttgtggtgacgtcgatgtccttgtgaca
cacccggatggaaaatcccacaaggggctgtttgggaaactgctggctaaattgaaagag
ctaggtttcctcaccgacgatcttgtcactgctgaagataacgggaaccagaagaaatac
ctgggtgtttgcaagcttccaggagaggggcggaagcacagaagactggacttaatagtc
gtgccatatgatgaatatgcatgcgcacttgtctacttcactggatctgcccacttgaac
cgatcgctgcgccacctagcaaagaaaatgaacatgtctctctctgaacactcattgaat
gtcggtgtcgtaagacgtggctctgagaaaatctacgaaggaacaccagtgcctacgcca
acagaagaatcagtgtttgtaaaacttggggtcccttaccgaccacccgaggaaagggac
cattag
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