Mya arenaria (softshell): 128211819
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Entry
128211819 CDS
T09995
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
maea
Mya arenaria (softshell)
Pathway
maea03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128211819
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
maea03041
]
128211819
03009 Ribosome biogenesis [BR:
maea03009
]
128211819
Enzymes [BR:
maea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128211819
Spliceosome [BR:
maea03041
]
Complex A
U2 snRNP components
U2 related factors
128211819
Complex B
128211819
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
128211819
Ribosome biogenesis [BR:
maea03009
]
Eukaryotic type
90S particles
Helicases
128211819
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
WHD_HA2
DEAD
Helicase_C
nSTAND3
AAA_22
AAA_19
SRP54
Flavi_DEAD
ABC_tran
nSTAND_NTPase5
AAA_25
Cas3-like_C_2
TsaE
AAA_7
NACHT
T2SSE
Motif
Other DBs
NCBI-GeneID:
128211819
NCBI-ProteinID:
XP_052772854
LinkDB
All DBs
Position
12:16868833..16885825
Genome browser
AA seq
726 aa
AA seq
DB search
MSKRHRIDVGDSYRKREDDGRRDRSRSPVKEKSQSIFEQFNIPKPQLQINPFTGLPHTPR
YLQLLAKRKSLPVWEYKEKFVEVLNKHQTLVLVGETGSGKTTQIPQWCLDWVRVRYNKKG
VACTQPRRVAAMSVAQRVSEEMDVGLGQEVGYSIRFEDCTSSKTILKYMTDGMLLREAMS
DPLLENYGVVLLDEAHERTLATDILMGLLKEVAKQRSDLKIIIMSATLDAGKFQNYFDNA
PLMSVPGRTHPVEIFYTPEPERDYLEAAIRTVLQIHMCEEIEGDILLFLTGQEEIDEACK
RIHREVENLGPDVGDMKCIPLYSTLPPNLQQRIFEPPPPNKPNGAIGRKVVVSTNIAETS
LTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASGQQRAGRAGRTKPGKCFRLYTE
KAFKQEMQENTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLA
ALDDNGDLTELGSMMAEFPLDPQLAKMVIASTDFSCSNEILSITAMLSVPQCFVRPTELR
KAADECKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDNFINFRSLKSADNVRQQLARI
MDRFNLKRSSTEFTSRDYYLNIRKALVSGFFMQIAHLERTGHYLTVKDNQIVQLHPSTCL
DHKPEWVLYNEFVLTTKNYIRTVIDIKPEWLVQIAPQYYDMSNFPHCEAKRQLERIIAKV
QAKGYE
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaacgacatcgcatcgatgttggggattcttacaggaaaagggaggatgatggg
agaagggacaggtcacggtctccggtcaaggaaaagtcacagtccatctttgaacagttt
aacattccaaaaccacagttacaaataaatccatttacaggcttgccacatacaccacgc
tacctacaactgctggccaagaggaagagtctgccagtgtgggagtataaggaaaagttt
gtagaggttcttaacaagcatcagacacttgtgctggtgggagagactggctccggaaaa
accacacagattccacaatggtgcctggactgggtacgggtgcggtacaacaagaaagga
gtggcgtgtacccagccccgaagagtggcagccatgtcagtagcccagcgtgtatcggag
gaaatggatgtcggtcttggccaggaggtcggatacagtatacgatttgaggactgcacc
tcatctaagactatactgaagtacatgacagatggtatgttactgcgtgaggcgatgtct
gatcctcttcttgagaactacggagttgtcttgcttgatgaggcccacgagcgcaccctg
gccaccgatatactgatgggactgttgaaagaggtagccaagcagaggtctgacctgaag
atcatcatcatgagtgctactctggatgctggcaaattccagaactactttgacaacgcc
ccattgatgagtgtgccaggacgtacccaccctgtggagatattctacacgcccgagccc
gagcgtgactacctggaggcggccatcaggacagtgctgcagattcacatgtgtgaggaa
atagagggagatattctactcttcctcactggacaagaggagatagatgaggcatgcaag
cgtatacatcgggaggtggagaacctgggaccagacgtgggagatatgaagtgtataccg
ctctactccaccctcccacccaacctacaacagaggatctttgaacctccaccgcccaac
aagcccaatggagctataggacgtaaagtggtggtgtctacaaacattgcggaaacatct
ctcacaattgacggtgtggtgtttgtgatagacccaggattcgccaaacaaaaggtgtac
aaccctcgtatccgtgtggagtccctccttgtgacggccatcagtaaggcaagtggccaa
cagcgtgccggtcgcgctggtcgtacaaagcctggcaagtgtttccgactctacacggag
aaggccttcaaacaagaaatgcaggaaaatacatatcccgagatccttcgttccaacctg
ggctccgttgttctgcagttgaagaagcttggcattgacgatctcgtgcactttgacttc
atggacccacctgctcctgagacattgatgagagccctggagttgctgaactacctagct
gcccttgatgataatggagacctgacggagctgggctcaatgatggcggagttccctctt
gacccccagctggccaagatggtcatcgccagtacagactttagctgctccaatgagatt
ctctccatcactgccatgttgtcagtgccgcagtgttttgtgcgcccgacggagctccga
aaggcggccgacgagtgtaaaatgaggttcgcacacatcgatggagatcatcttacgcta
ctcaacgtctaccacgctttcaagcaaaaccaggaagatcctcagtggtgttacgacaac
ttcatcaacttccgatccctgaagagtgcagacaacgtgagacagcagctggcgcgcatc
atggaccgattcaacctgaagcgctccagcacggagttcacaagcagagattactatctc
aatatacgcaaagcgcttgtgtcaggatttttcatgcagattgcccaccttgagaggact
ggtcactacctgaccgtgaaggacaaccagattgtccagcttcacccttccacctgcctc
gaccacaagccagagtgggtcctctacaacgagtttgtactcacaaccaagaactacatc
cgtactgtcattgacatcaagccggagtggttggtacagatagcaccgcaatactacgac
atgtcaaacttcccccactgcgaggcgaagagacagctggagaggattatagccaaggtc
caggccaagggctacgagtaa
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