Mya arenaria (softshell): 128212133
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Entry
128212133 CDS
T09995
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
maea
Mya arenaria (softshell)
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
maea03009
]
128212133
Ribosome biogenesis [BR:
maea03009
]
Eukaryotic type
90S particles
Other 90S particles
128212133
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
OB_RRP5_4th
HAT_PRP39_N
Suf
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
TPR_14
TPR_19
OB_RRP5
DUF2110
NRDE-2
TPR_16
TPR_15
ARM_TT21_N
Rep_1B
TPR_12
DUF7017
TPR_2
TPR_CcmH_CycH
Motif
Other DBs
NCBI-GeneID:
128212133
NCBI-ProteinID:
XP_052773378
LinkDB
All DBs
Position
12:complement(1922352..1956843)
Genome browser
AA seq
1918 aa
AA seq
DB search
MNEENFPRGGRRDRASTIEQTDADKKSHKKVPKRKDENLFAEKDGSSEKKKGKRSKSEDG
GAGKQKKSRMEGDMVGKINILTPTTLNKKSLYPGMLMLGYVKAVHNLSLTVALPNGLSGV
VEITNISTAYTESLQQFAQQQEDGGEVESVASLGELFHAGQLVPCKLLEGGGPEDGRKLN
LSINPRDVNGDIQATSLRHGMCVYGSVMSVEDHGYIMDIGVKGVQGFVKHKHAGRYIQLH
NKGHTLCVGQLLMCGVNLEGDRMAVLTGQHRVLNLIIDPAKLHSLKMSDEADVAFSALLP
GMKVTATVQKVVGEKGVVLKFHSSKGVVHNSHLSHPAGKYTQGQEVSAVVLSIHPLVKTI
HLSLLPHLADYTGVPTPLFPGVGPSTVLEAARVTHADKTQGVFLTWQDKLHLYAQLHNLS
DKKIENVALAFKPGTTHRSRILGFYPMENLVIVTLKRSVVDEKLMSITDIHPGELIECTV
KELKPKGIVVEMGYRVSGFIPSIHLADVTLTHPEEKFKVGTKLKCRVLEVNRKRSRVYLT
HKRSLLNSKYPLISAMDQVETGMVLEGFVSSIQKFGVFVTFYNHVQGLVPRPLLSSEPIP
YPEKVFYVGQVVRCKVISVQQAEGKLKLSFVLEGKKEFGAREKIPEGFKVGECVKCVVAQ
KNATGLDVEIGNSGKRGFLPRMHLSDSVDLCTALWEKYRVGDEIETTMYWNKNKVAILTC
KLSLIEAAKEGDLCKTFGDIEPGMMLPGAIKNIMPYGVFVEFANGLFGLVPNQYGVDKKV
PDLGKVYRPGQTVVGKVVEVNQEKARFLASLRMQDCYHGNTETGLDITEAHLSDRQKLLD
IEARAEGMRGTLARIPVGSVHKVMVTQVTDLGVIGQLESGVKVVVTKAHMKGVEVGEGES
VHGAVLYIDLNKQCVEVSLLPQLVKDVDKRTSAKNTPEKAKVGQKVKCVVLLVKDDYVLV
SLKGHCRGQLAYLPARRHWNDVLEKFQYEAGQENAIIIKRIDGETILGSLKVHEDREKED
EDRVSHIPTHNLKLGDICTARTRKIYSDQIYINISGTHGRVHQTEMLDKIENGTSPIPGI
KSDSEVKVRVIGFREAKTFKYLPISHPNLHRAMPECSMKPSILAMETLPPDFSCTTGRLD
VGSKVVAFVTKVTGQCVWTQVSPSVMGKVHILHLSDDVKVLKKFRLHYIVGKGYNATVIG
VENDAVVELSFCAKKVEVQEGRPTRGIVTCVQRETGLVLQLPDGVRGTVNLTDITDHFQD
SPTTGLKKGDIITGTVEEFNLIAKRAVVSLRPKRKDEGEIHDPRVGSVAELKEGQVLRGY
ITSLSHNGIHVSLGHGVWGMVPPDAIIADRSLDHTTDHFTVGQVVTVKVKSKAEDGSKIN
LSMLQKDTGVAVKLGKKKQRQRKRTLSSSSVGSDDGVSENKKVKRQRSLSAGSVDMEQDA
EDKAVDSDVEEDIADHVDLPVMKVEKKKKSGKKKSSDDNSDIISGISDLKTRKISESSET
EKGKKKKRKKKGEIIEDKSQDLVLSDKENEVIVKSKKVSKNKKDKTVKTAETVSQEVMED
SEGHDSDSGIEVKVMSTASEKKPVLDVGAGFSWDTEFKIPALGSGETSDEDSDDDNNQPQ
VKKSKEEIRREKAEEEKKLYKYEMEVLGGDRRPETSDDFDRLVLQSPNSSLVWLRYMAFH
LESTEIDKARSVAERALKTISFREEQEKLNVWVAYLNLENMYGTSESVGEVLARATKQCD
SIAVNLQMVNIYTTSGKMEEAEQVYNNLVRKHSVNKNVWLKFGEFYFQQGRSDSARKLMQ
RALKSLDMRHHVDVITRFAQFEFKLGEPERGKTMFENTLSTYPRRTDLWSVYIDMVTKIG
QHDNTRSLYNRVISQKMSAKKMKFFFKKFLQFEEKFGSPSQVAEVKRKALQYVEAGAE
NT seq
5757 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaagagaattttccacgtggtgggaggcgagacagggcatctacaatagaacaa
actgatgcagataagaaatcccacaaaaaagtcccaaagcgaaaggatgaaaatctgttt
gcggagaaagatggtagcagtgagaagaagaaaggaaaaagaagcaagtctgaagatgga
ggagcggggaaacagaagaaaagtcgtatggaaggggacatggtgggcaagatcaacatc
ctcacccccacaacactcaacaagaagagcctttaccctggtatgttgatgctgggttac
gtgaaggcggtacacaacctgtctctgactgttgccctgccgaatggcttatcaggagtg
gtggagatcaccaacatcagtacagcatacacagagagcctgcagcagtttgcccagcag
caggaagatggtggggaggtagagtcagtggcatctttaggtgagctgttccacgctggc
cagctggttccctgtaagcttctggagggtggaggaccggaggacggcaggaagctcaac
ctgtccatcaaccctcgtgacgtgaacggagacattcaggcaaccagtctacgtcatggc
atgtgcgtgtatggaagtgtaatgagtgtggaggatcacgggtacatcatggatattgga
gtgaagggggtccagggctttgttaaacataaacatgccggcagatacatacagctccac
aataagggtcataccctgtgcgtgggtcagttactcatgtgtggagttaacttggagggg
gacaggatggccgtgctgactggacaacacagggtccttaacctgattattgaccctgct
aaattacactctctgaaaatgtcagatgaagctgatgtggcattttcagctctccttcct
ggcatgaaagttacagcaacagtgcagaaggttgtaggtgaaaagggcgtggtgttaaag
ttccactcctcaaagggtgtggtccacaactcccatctgtcccaccctgccggaaaatac
acgcaaggccaggaggtatctgctgtggtcctgtccatccaccctcttgtaaagaccatc
cacctgtccctgttgccccatctggctgactacacaggtgtccccacccccctcttcccc
ggggttgggccaagcacggtacttgaggcagcacgggtcacccatgccgataaaacacag
ggagtcttcctcacatggcaggataagctgcatctgtacgctcagctgcacaatctcagt
gacaagaagatagagaatgtggctcttgcctttaagccgggcactacacacaggtcaagg
attttgggcttttatcccatggaaaatctggtgattgtaacattgaagaggagtgttgtg
gacgaaaaattaatgagcatcacggacatccaccctggtgaactaattgagtgtactgtg
aaggagttaaagcctaagggcatcgtcgtggagatgggttaccgtgtgtctgggttcatt
cccagcatacacctggctgatgtgaccttgacacacccagaggagaagttcaaggtcggg
accaaactcaagtgcagggtgctagaagtgaatcgtaagcgatcgcgagtgtacctgacc
cacaagcgctctctgttgaacagcaagtacccgttgatctctgccatggaccaggtggag
actggtatggtcctcgagggctttgtctccagtatacagaagtttggggtcttcgttact
ttctacaaccatgtgcagggcctagtccctcgtcctttgttgagctcagagcccattcca
tacccggagaaggtgttttatgtggggcaggtggtcagatgtaaggtcatatctgtccag
caagcagaagggaaactcaaactctccttcgtgttggaaggcaagaaagagtttggagct
agggagaagattccagagggcttcaaggttggagagtgtgtgaagtgtgttgttgctcag
aagaatgccacagggttggatgtggagatagggaattctgggaaacgtgggttcctaccc
agaatgcacctctctgactctgttgacctgtgcacggcattgtgggagaaataccgggtc
ggtgatgagatcgagaccaccatgtactggaacaagaacaaggtggctatattgacttgt
aaactgagtttgatagaggcagccaaggaaggagatctctgcaagacatttggagacatc
gagccaggaatgatgttgccaggtgccataaagaacatcatgccatatggagtgtttgta
gagtttgccaacgggctgtttgggcttgtacctaaccagtatggtgtggacaagaaggtt
ccagacctggggaaggtttacaggcctggccagacagtggtgggcaaggtcgtggaggtg
aaccaggagaaggcccgcttcctggcgtcactacgcatgcaggactgttaccatggcaac
actgagactggtctcgacatcactgaggcccatctgagcgacaggcagaaactgctggac
attgaggccagggcagagggcatgagaggcacattggctcgtatcccggtagggagtgta
cacaaggtcatggtgacccaggtcactgacctaggggtcataggtcaactggagtctggg
gtcaaggtcgttgttaccaaggctcacatgaaaggtgtggaagttggggaaggggagagt
gtacatggagctgtgctctatattgacctcaacaagcaatgtgtagaagtgtcactgtta
cctcagctagtcaaagatgtggacaagagaaccagtgcaaaaaatacacccgagaaggca
aaagttgggcagaaggtgaagtgtgtggttctgctggtcaaggatgactacgtgctggtc
agtttgaagggtcattgtcggggtcagctagcctatctgcctgctcgcaggcattggaat
gatgttcttgagaagttccagtatgaagctggccaagaaaatgccattatcatcaagagg
attgatggggagacaatcttgggctccctgaaggttcacgaggacagagagaaggaggac
gaggatcgcgtatctcatatacccacacacaacctcaaacttggggatatatgtacagct
aggactcgtaagatctacagtgaccagatctacatcaacatcagtggcacacacggacgt
gtgcatcagacagagatgcttgacaaaattgaaaatggaacttcacctataccaggaatc
aagagtgattctgaggttaaagtccgcgttataggcttcagggaggctaaaacattcaaa
tacttgccaatatcgcatcccaacctccaccgggctatgccagagtgttcaatgaagccc
agcatcctcgccatggaaaccctaccgccagacttctcctgtacgacaggcaggctagac
gtcggctcgaaggttgtcgcctttgtcactaaggtgaccggtcagtgtgtgtggacgcag
gtcagtccctcggtgatgggcaaagtgcatattctccacctctccgatgatgtcaaggtc
ctgaagaagttccggttacattacattgtggggaagggctacaatgccacagtaattggt
gtggaaaatgatgcagtagtagagctctccttctgtgccaagaaggtcgaggttcaggag
ggtcggccgacccggggaattgtgacgtgcgtacagcgagaaactgggctcgtgctacag
ttaccagacggtgtgcggggcactgtaaatctgacggacatcactgaccacttccaggac
tccccgacaacaggattaaaaaaaggggacataatcactggaacagtggaggagtttaac
ctgatagccaagagggcagttgtctcccttagacctaaacggaaggatgagggtgaaata
cacgacccgcgggtagggagtgtggcagagttgaaggaaggacaggttctgcgcggctac
atcacctctctctcacacaatggaatccatgtcagcctgggtcatggtgtgtggggcatg
gtgcctccagatgccatcatagctgatcgctcccttgaccacactactgaccacttcact
gttggccaagttgtcacagtcaaggttaaaagcaaagcagaagacggctccaagatcaac
ctgtccatgcttcagaaggacacaggggtggccgtcaaactcggcaagaagaaacagcga
cagagaaaacggacgctgtcttcatcttctgttgggtcggacgacggcgtgtcagagaat
aagaaggttaaacgacaaagaagtttgtctgcaggcagtgtagacatggaacaggatgca
gaggacaaagctgtagatagtgatgttgaagaggacattgctgatcatgtggacttacct
gtgatgaaagttgagaagaagaagaaaagtggaaagaagaagtcttctgatgacaatagt
gatattatcagtggtatatctgatcttaaaactagaaaaataagtgaaagttcagaaact
gaaaaaggaaaaaagaagaaaagaaaaaagaagggtgaaataattgaagataagtcacag
gatctggtgttaagtgacaaggaaaatgaggtcattgttaaaagcaagaaagtatctaaa
aacaaaaaagataaaactgttaagacagctgaaactgtatctcaagaagtgatggaggat
agcgaaggccatgattctgacagtggaatagaggttaaagttatgtccacagcctctgaa
aagaagccagtacttgatgtaggggctggattttcctgggatacggagttcaagatccct
gcccttggctcaggggagaccagtgacgaggactccgacgatgacaacaatcagccacaa
gtaaagaaatcgaaagaagagatcaggcgtgaaaaggctgaggaagaaaagaagttatac
aagtatgagatggaagtgttgggtggggacagaaggccagaaacatcagacgactttgac
agactggttctccagtctcccaacagctcgcttgtctggttgcgctacatggccttccac
ctggagtctactgagatagacaaggctcgctccgttgctgagagggctcttaaaaccatc
tcctttagagaggagcaggagaagttgaatgtctgggtggcatacttgaatctggagaac
atgtatggcacatctgagtctgtgggagaggttctagctcgagccaccaagcaatgtgac
tccattgctgtcaacctccagatggtcaacatatacacaacatctggcaagatggaggag
gctgagcaagtgtacaacaacctggtcaggaaacattctgtcaacaagaatgtctggctc
aagtttggggagttttacttccaacaggggcggtctgactctgcacgaaaactcatgcag
agagcccttaagagcctggacatgagacatcatgtggacgtgattacacggtttgcccag
tttgagttcaagctcggggagccggagcgaggcaagacgatgtttgagaacaccctgagc
acgtacccccgccgtactgacctttggtcagtctatatcgacatggtcaccaagattgga
cagcatgataatacgaggagcctctataacagagtgatcagccagaagatgtcggccaag
aagatgaagtttttcttcaagaagtttctgcagtttgaggagaaatttgggagcccatcc
caggtggctgaagtgaaaagaaaggcccttcaatatgtggaggctggggctgagtag
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integrated database retrieval system
