Mya arenaria (softshell): 128212332
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Entry
128212332 CDS
T09995
Name
(RefSeq) LOW QUALITY PROTEIN: TATA-binding protein-associated factor 172-like
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
maea
Mya arenaria (softshell)
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
maea03021
]
128212332
Transcription machinery [BR:
maea03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
128212332
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
Helicase_C
HEAT
TOR1L1_N
HEAT_EF3_N
HEAT_GCN1
HEAT_EZ
HEAT_2
HEAT_GCN1_C
HEAT_ECM29
HEAT_MROH2B_C
TPR_TTI1_N
Motif
Other DBs
NCBI-GeneID:
128212332
NCBI-ProteinID:
XP_052773695
LinkDB
All DBs
Position
2:2195399..2260756
Genome browser
AA seq
1805 aa
AA seq
DB search
MTTRLDRLFLLLDTGSTALIRKSAAEQLGDVQKLHPYELGNLLNKLHGYLRSNNWETRIA
AAQAVQAIARNVPQWEPRGAPKQETQNEEAFLNGKLLLSKFDVQRVLENGASLLGSEGAQ
FNEDEKLSGLDERDRLAYQRQMLNKKLGLDMAGNLKLGLDTDLYTDEDLLTGMKKEDETK
PDTRQVSELLQLQLGTNLSARERNHAKRKARLMQKQISRDSPVLDHDGEPPSKKLKGENY
GVDSPASVDSAEEQEEWPFELFCEQQMSDLFHSAWETRHGAATGLREVVKIHGRGAGKSI
DTPVDQMLSGNQLWLSDLALRLMSVIALDRFGDFVSDEVVAPVRETCAQTLGVVMKFLEP
EGIQGVLAILLQLLQQKQWEVRHGGLLGIKYLLAVRQDMTVELLPSVLPFLYLGIQDVDD
DVRAVAASALVPVADTLIQVLPDQVPTVVSCLWEILVDLDDLTASTNSIMSLLATLHAHP
QANILDRLSKPLTELVPRLLPFFRHNIVSVRKAVLETVNTLVQVSSEKDPACSWLPSVLQ
PLLCHIYQRSLLETSPEILRLIPSVWGRVLEKATPLSLVAVATPWMGVWLSLAMQPSKIP
YDHSFLVEAKHPGRGPDSVSHRSRHSLEQDSPTPGTSKTQPMYIAGFESLNSSVQERDQN
VVRARMTAAGLFGVLCQRVTVPLNTLPTGYEKPSDSLTKLLTFHLNTRSAVQRIVIAEVL
YAWASCQACLCPPEVKSKVLETLSEGIYFDEIALGFTRLQTECRDFMASLKQQGINLDMI
VPQTLILSLDQAAALVGQDFEQVKSTLKPRALATLEDRRASLSTTVAQISADQQILSVRV
QSSLAKAAVLLDMIPEKLNPVIRPLMDCAKKEENATLQHEAAKCLSILLRQCMSRDPSPN
AKVVKNLCGFLCSDPAHTPAIIPQLNNNTAAEMNCDTFKGNITLAKICKVPDTDRRRTRL
PGSRSDMGVSPDLSKEEEQVQRQLCIQRRGGEITLCRVAGDFSDKLPTDLPALWETVTKY
LTENKDFEVTDSIAQEIVNSLQVLESIGPSLHSTLLPKLVESLQQLKTYLEHRYAGIRHI
SARCVGTLARLSTPDTMLFLIEVVIPMLEASDNITQRQGASEALYHVIESLGLDIVPYIV
LLIVPVLGRMTDQNTDVRTLATHCFASLIRLLPLETGVPDPPDMAATLSEQKQRDRVFLE
QLLDTSKLENYSIDVPIKAELRKYQQDGVNWLGFLSKYKLHGILCDDMGLGKTLQSICIM
ATDHYRRQVKYKESQSPDSSPIPSIVVCPPTLIGHWVYEIQKFIDEEYLNPLMYAGTPTE
RQRLQKKSKNHNLIVASYDVVRNDAEFFSSIHWNYCILDEGHIIKNGKTKISKAVKQLKC
NHRLILSGTPIQNNVLDLWSLFDFLVPGFLGTEKQFQARYGKPILASREAKSSSKEQEAG
ALAMETLHRQVLPFILRRLKEDVLQDLPPKIIQDYYCDLSPLQVRLYEDFARSQAQRGVE
DCVTSVKVSESKRGSTHIFQALQYLRKVCNHPALVLNQNHPKYTEVMASLKSQGSNIRDL
NHAPKLTALKQLLSDCGIGVDEVPASLGXETPVVNQHRVLLFCQLKGMLDIVETDLLKCQ
MPSVTYLRLDGSVPAGNRHDIVNRFNNDPSIDILLLTTHVGGLGLNLTGADTVVFVEHDW
NPMKDLQAMDRAHRIGQKKVVNVYRLITRGTLEEKIMGLQKFKITIANTIISQDNASLST
MGTDQLLDLFTLEEKRKGESASSSEQKHSDKQDTVKAILDGLGDLWDEQQYESEYDINTF
MKSLV
NT seq
5418 nt
NT seq
+upstream
nt +downstream
nt
atgacaaccagactagatcggctgtttctccttttggacactggttccacagcattgata
cgaaaatcagctgcagagcagcttggagatgtacaaaaacttcatccatatgaacttgga
aacctcctcaataagttacatggctatctgcgaagtaacaactgggaaacacgaattgca
gcagcccaggccgttcaggcgattgcgcgaaatgttccacagtgggagccaagaggtgct
ccaaaacaagaaacacaaaatgaagaggctttcctcaatggtaaactgctgttgtcaaag
tttgatgttcaaagagtccttgaaaatggagcctccctgctgggttcagaaggagcacaa
tttaatgaggacgaaaaattgtctggtcttgatgaacgagaccgccttgcctaccagcga
cagatgttgaacaagaagcttggcctggatatggccggcaaccttaagctcgggcttgac
acagacctttatacggacgaggatctgctgaccgggatgaagaaggaagatgaaacaaaa
cctgacacaaggcaggtgtcagaactgctacaactgcagctgggaaccaatcttagtgct
agagagcggaaccatgcaaaacggaaagccagactcatgcaaaaacagatttctagggac
tcaccagtactagatcatgatggcgagcctccttccaagaaattaaagggagaaaactat
ggtgtggactcacctgctagtgttgacagtgctgaagaacaggaagaatggccatttgag
ttgttctgtgagcaacagatgtccgacctgtttcacagtgcttgggagacgaggcatggt
gcagccacagggttacgtgaagtggtcaagattcatggcagaggtgctgggaaatccata
gatactcctgtagaccagatgttatctggaaaccagttatggctgtctgaccttgcactt
cgactcatgtccgttattgcactggacagatttggagactttgtctcagatgaggttgta
gcccctgtcagagagacatgtgctcaaacccttggcgtggttatgaagttccttgagcct
gagggaatacaaggggttctagccatcctcttacagttattgcagcaaaaacaatgggag
gtgcgtcatgggggtctgcttggcataaagtatcttctggctgtaagacaggacatgaca
gtggaattgcttcccagtgttttaccattcctgtacctgggcatacaagatgttgatgat
gatgtacgtgcagtggcggctagtgctctcgtgcctgtggcggacacactgatacaggtc
ttgcctgaccaggtaccaacagtagtgtcttgtctgtgggaaatacttgtggatcttgat
gacctgacagcgtctaccaattccatcatgtcactgctggctactcttcatgcccaccca
caggctaacatactggataggttgtccaaaccattaactgagcttgtgccgagactgctt
ccattcttcagacataacatagtctcggttagaaaggcagtgcttgagactgtgaacact
cttgttcaagtatcgtcagaaaaggatccagcatgtagttggctcccatcggtcttacag
ccactgctgtgtcacatataccagaggagcttgctggaaaccagcccagaaatcctcagg
ctcattccaagtgtctgggggcgtgtcttggaaaaggccacgcccctttccctggttgct
gtggccaccccatggatgggagtgtggttatcactcgctatgcaaccttccaagattcca
tatgatcacagctttctggtggaggcgaaacatcctggaaggggcccagattctgtgtct
catcgtagtcgccactcccttgaacaagacagccccaccccggggaccagcaaaacccag
cccatgtatatagcagggtttgagtccctgaactcatctgtgcaggaacgggatcaaaat
gtggtcagggcgaggatgacagctgctggtctgtttggagttctatgccaacgtgtgaca
gtgcctcttaataccctccccactggctatgagaagccctcggactcgctgactaagttg
ctcacatttcatctcaacacacgctccgctgtacagaggattgtgatcgctgaggtgttg
tatgcatgggcctcgtgtcaggcatgtctctgcccccctgaggtcaagtccaaagtcttg
gagacactctcagaaggcatctactttgatgagattgcccttgggtttacgaggctgcag
acagaatgccgagacttcatggcaagcctgaaacagcagggaattaatctggatatgatt
gttccacaaacattaattttaagcctggaccaggctgcggctctggtgggtcaagacttt
gagcaagtaaaatctaccttgaagccccgggctctagcaacccttgaggacagaagggct
tcactaagtactacagttgcccagatctcagcggatcagcagatactctctgtgagagtt
caatcaagcctggcaaaagcagcagtcctgctagacatgattccagagaaattaaaccca
gttatacgaccgctcatggattgtgccaagaaggaggaaaatgcaactctacagcatgag
gcagccaaatgtctgagtatcctgcttcgacaatgcatgtctcgagatccaagcccgaat
gccaaggtggtaaagaatctgtgtgggttcctgtgttctgacccagctcacactcctgcc
ataataccccagctcaataacaacactgctgctgaaatgaactgtgatactttcaaaggg
aatattacgcttgccaaaatctgtaaggtgccagacactgatcgaaggagaacgagactg
cctggttctcgatccgatatgggtgtgtcccctgatctcagtaaggaggaagaacaggtt
cagagacagctgtgtatacagagaaggggaggggagataactctgtgtagggttgctgga
gatttctcagacaaattgcccacagacttacctgccctttgggaaacagttacaaaatac
ctcacagaaaacaaagattttgaagtgacagactccattgctcaagagattgtaaatagt
ctacaagtgctagaatctataggaccttcactacattcaaccttgcttccaaagttggta
gaaagtcttcaacagctgaagacctatttagaacacagatatgcagggattcgccacatt
tccgctcgttgtgtcggaaccctagcgcgtctttcaaccccagacacgatgttgtttctc
atcgaggttgttattcccatgttggaagcttcagacaatataacgcagagacagggggct
tcagaagctttgtatcatgttatagaaagtcttggactggatattgttccctacattgtc
ctgctgattgttcccgtactgggccggatgacagaccaaaatacggatgtaagaacgctg
gccactcactgctttgcatctctcatacgacttcttccactggagacaggggttcctgac
ccacccgacatggcagctactttgtctgagcaaaaacagcgagatcgggtattcctggaa
cagctgttggacacatccaagctggaaaactactctattgacgtgccaataaaggctgag
cttcgtaaatatcaacaggatggcgttaactggcttggattcctgagcaaatacaaactc
cacgggattttgtgtgatgatatgggtctcgggaagacacttcagtctatatgtataatg
gctacagatcactatagaagacaagtgaaatataaggaatctcagagccctgatagttca
cccatcccctcaattgtcgtctgcccacccaccctgattggtcactgggtgtacgagatt
cagaaatttatagatgaggaatacctcaaccccctcatgtatgcgggcaccccaactgaa
agacagagattacaaaagaaatccaaaaaccacaatttgattgttgcttcttacgacgtt
gtcagaaatgatgcagaattcttcagctctatacactggaactattgcatcctagatgaa
ggtcacattataaagaatggtaaaacaaagatctcaaaagcagtgaagcaattaaaatgc
aaccatcggctaatcctgtctggtaccccaatccagaacaatgtccttgacctttggtcc
ctgtttgattttctggttcccggttttttgggaacggagaagcagttccaggccagatat
gggaaaccgattcttgcaagcagggaggccaagagttcatctaaagaacaggaagctgga
gcgttggccatggaaactctacatcggcaagtcctaccctttatcctgcgacgacttaaa
gaagacgtactacaagatctgccccctaaaatcatccaggactattattgtgatttgagt
ccacttcaggtacgcttgtacgaggactttgcacgctctcaggcacagaggggtgtagaa
gattgtgtcacgtcggtcaaggtcagcgagagtaagaggggatccacacacatcttccag
gcgttgcagtatttacgcaaagtgtgtaatcacccggctcttgtgttgaaccagaaccat
cccaagtacactgaagtgatggcttctctcaaatctcagggttcaaacattcgtgatctc
aatcacgcccccaagctaacagctctaaaacagctgcttagtgactgtggtataggtgtg
gacgaagtgccggccagcctgggangtgaaactcccgtcgtgaaccaacatcgggtgcta
ctattttgtcagctcaaaggcatgctggacatagtggaaaccgatctactcaagtgtcaa
atgccatctgtgacttaccttagactggatggaagtgtccctgccggcaacagacatgac
attgtcaacaggttcaacaatgatccatcaatcgacattctgctgctgacgacgcacgtt
ggcggactgggacttaatctgaccggtgctgacacggtggtgtttgtcgaacatgactgg
aatcccatgaaagatctacaagctatggatcgggcgcatcgtatcgggcagaagaaagtc
gtgaatgtttatcggcttatcactcgtggaactcttgaggaaaagattatgggtcttcag
aagtttaagattacaatagcaaacacaattatcagccaagacaacgcaagcttatcaaca
atggggacagaccaactactggacctattcactctcgaggaaaagcggaagggcgagagt
gcatcttccagcgaacaaaaacactcggataaacaggacacggtgaaggcaatattggat
ggtttgggcgatctctgggatgagcagcaatacgagtccgaatatgatatcaataccttc
atgaaatctctggtgtga
DBGET
integrated database retrieval system
