Mya arenaria (softshell): 128212771
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Entry
128212771 CDS
T09995
Name
(RefSeq) nucleoporin NDC1-like
KO
K14315
nucleoporin NDC1
Organism
maea
Mya arenaria (softshell)
Pathway
maea03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128212771
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maea03019
]
128212771
Messenger RNA biogenesis [BR:
maea03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
128212771
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Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
128212771
NCBI-ProteinID:
XP_052774035
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Position
13:41866930..41897830
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AA seq
557 aa
AA seq
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MDTIDKWFIREVLVWRSGAAVAWSVFSLPVIAGFYVSLTTLQPLHPLSWLPDTFGCVLSL
SFISCVLLLMILNGLFYSYSRKTFTVVPTASVTRFSHLGQLCRGPVLLYMTICMGSGHLI
GWVCTGLLGARYAGLTFKCEPDSESRCINEHHLFLVLYGGYTGLMYIVHHYIQQNHVIRF
PQAQEAKYAQVRCQLASTVWSALGHVVWQIKFFYLGFYLLGGIPRDFIASSLSLNYGPGP
RLDSMRGLLFDVALLWQTLLLGVFIQFSWTLAALLHKIYNTESYEFPISTMFDNFKNKCL
VDAMSCTSLPLLQALGFQDLNHLSKHSLGRRKELFSLSQPGGHPHNWNKILAVCLSVLNE
LSEGVQEVNWKILASAPVRKPSAEKHAVTTEGGKTESSEADQNEKKSTVRERIINGIKRR
PEMKFFTREGGEPNKSKNLFATAYLQIWTVEALASLVGASVREDLFGVVQMSLSDIVSNI
LNLHENVDKHFKLTGGVGRRSAREGGGASDLSLKYQLQASIKASIYNIVNTFGKHLLEVG
LPPETEKRLQHFLHYRE
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atggacacaatagacaaatggttcatacgagaggtgcttgtctggagaagtggcgctgca
gtggcatggtcggtgttctctctgccagtgattgcaggcttctatgtgagtctgaccaca
ctccagcctctccatccacttagttggcttccagatacatttggatgcgtgctgtcattg
tctttcatcagctgtgtgctgctgttgatgattttaaatggactgttttactcatacagc
agaaaaacatttacagtggtgcctactgcatcagtgacaagattttcccaccttggtcag
ctatgtcggggcccggtgttactatatatgaccatttgcatgggctcaggacatctgatt
ggctgggtgtgtacagggctccttggggctcgatatgccggccttacattcaagtgtgag
cctgacagtgaatcacggtgtatcaatgagcaccatctgtttctggtgttatacggtgga
tacacaggcctcatgtacattgtgcatcactacatccaacagaaccatgtcatacgcttt
ccccaagcccaggaagccaaatatgcccaagtacgttgccagctagccagtacagtctgg
tcggctttgggacatgtggtctggcagataaagtttttctaccttggattctatcttctt
ggtggaattcccagagatttcattgcttcaagtctttctttaaactatgggccaggccct
agactggacagtatgagagggctgctatttgatgtggccctgctgtggcagaccctgtta
ctgggagtgtttatacagttctcctggacccttgcggctcttcttcataagatatacaac
acagagagctatgaatttccaatcagcacgatgttcgacaatttcaagaacaagtgtctg
gttgatgccatgtcctgcacaagcctgcctctacttcaggccctaggcttccaggatctc
aaccatctgtctaagcattcacttggtcgacgaaaagagctgtttagtcttagccaacca
ggtggtcatccccacaattggaacaagattctggctgtgtgtctctctgttctcaacgag
ctcagtgaaggtgtccaagaagttaactggaagatcctggctagtgcccctgtacgaaaa
cctagtgctgaaaaacatgccgtgacaacagaaggagggaaaacagaaagtagcgaagct
gatcaaaatgaaaagaaatcaacagttcgagaaagaataataaatggcatcaaacgaaga
ccagagatgaagttcttcacaagggaaggtggagagcccaacaagtccaagaacctgttt
gctactgcatatctccagatctggacggtggaagccctggcctccctggttggtgcctct
gtgagggaggatctgtttggggttgtccagatgtccttgtcagatattgtttccaacatc
ctcaacctacatgagaatgtagataaacacttcaagctgacaggtggggtggggcggcgc
tcggccagggaggggggtggagctagtgacctttcactcaaataccagttacaggcctcc
atcaaagcctccatatacaacatcgtcaacacttttggaaaacacttactagaagtgggc
ttgcctccagagactgagaagagattacaacattttctccattaccgagaataa
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